Guide to the Human Genome
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Name: CRIP1 Sequence: fasta or formatted (77aa) NCBI GI: 4503047
Description:

cysteine-rich protein 1 (intestinal)

Referenced in:

Stomach, Small Intestine, and Colon
LIM Domain Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5          5           2
 C cysteine            9.1          7           1
 D aspartate           1.3          1           1
 E glutamate           7.8          6           1
 F phenylalanine       5.2          4           1
 G glycine            13.0         10           2
 H histidine           6.5          5           1
 I isoleucine          0.0          0           0
 K lysine             13.0         10           1
 L leucine             3.9          3           1
 M methionine          2.6          2           1
 N asparagine          2.6          2           1
 P proline             7.8          6           1
 Q glutamine           0.0          0           0
 R arginine            3.9          3           1
 S serine              3.9          3           1
 T threonine           5.2          4           1
 V valine              2.6          2           1
 W tryptophan          1.3          1           1
 Y tyrosine            3.9          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cysteine-rich protein 1 (intestinal) 
CRIP2                 0.671   cysteine-rich protein 2 
CRIP3                 0.555   cysteine-rich protein 3 
CSRP1                 0.368   cysteine and glycine-rich protein 1 isoform 1 
CSRP2                 0.355   cysteine and glycine-rich protein 2 
CSRP3                 0.342   cysteine and glycine-rich protein 3 
CSRP3                 0.342   cysteine and glycine-rich protein 3 
CSRP1                 0.239   cysteine and glycine-rich protein 1 isoform 2 [Homo...
LASP1                 0.219   LIM and SH3 protein 1 
NEBL                  0.213   nebulette non-muscle isoform 
ABLIM1                0.181   actin-binding LIM protein 1 isoform c 
ABLIM1                0.181   actin-binding LIM protein 1 isoform b 
ABLIM1                0.181   actin-binding LIM protein 1 isoform a 
MICAL3                0.174   microtubule associated monoxygenase, calponin and L...
MICAL3                0.174   microtubule associated monoxygenase, calponin and L...
MICAL3                0.174   microtubule associated monoxygenase, calponin and L...
NRAP                  0.161   nebulin-related anchoring protein isoform C 
NRAP                  0.161   nebulin-related anchoring protein isoform S 
ABLIM3                0.155   actin binding LIM protein family, member 3 
TGFB1I1               0.148   transforming growth factor beta 1 induced transcrip...
TGFB1I1               0.148   transforming growth factor beta 1 induced transcript...
PDLIM5                0.142   PDZ and LIM domain 5 isoform b 
PDLIM5                0.142   PDZ and LIM domain 5 isoform a 
ABLIM2                0.142   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.142   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.142   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.142   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.142   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.142   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.142   actin binding LIM protein family, member 2 isoform ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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