Guide to the Human Genome
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Name: PRDM10 Sequence: fasta or formatted (1061aa) NCBI GI: 41349462
Description:

PR domain containing 10 isoform 3

Referenced in:

Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt prot [1160aa] PR domain containing 10 isoform 1
alt prot [1156aa] PR domain containing 10 isoform 2
alt prot [1023aa] PR domain containing 10 isoform 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         48           2
 C cysteine            2.6         28           2
 D aspartate           5.8         62           2
 E glutamate           6.9         73           3
 F phenylalanine       3.5         37           1
 G glycine             4.7         50           2
 H histidine           4.7         50           2
 I isoleucine          4.1         43           2
 K lysine              5.9         63           2
 L leucine             8.2         87           2
 M methionine          1.6         17           2
 N asparagine          2.6         28           2
 P proline             7.4         78           2
 Q glutamine           8.1         86           8
 R arginine            6.0         64           3
 S serine              8.1         86           3
 T threonine           7.3         77           4
 V valine              4.8         51           2
 W tryptophan          0.7          7           1
 Y tyrosine            2.5         26           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PR domain containing 10 isoform 3 
PRDM10                0.987   PR domain containing 10 isoform 1 
PRDM10                0.981   PR domain containing 10 isoform 2 
PRDM10                0.953   PR domain containing 10 isoform 4 
ZNF595                0.057   zinc finger protein 595 
ZNF786                0.057   zinc finger protein 786 
ZNF184                0.057   zinc finger protein 184 
LOC100287429          0.056   PREDICTED: hypothetical protein XP_002343926 isofor...
LOC100287429          0.056   PREDICTED: hypothetical protein XP_002343925 isofor...
LOC100287429          0.056   PREDICTED: hypothetical protein XP_002343927 isofor...
ZNF84                 0.056   zinc finger protein 84 
ZNF84                 0.056   zinc finger protein 84 
ZNF425                0.056   zinc finger protein 425 
ZNF510                0.056   zinc finger protein 510 
ZNF182                0.055   zinc finger protein 21 isoform 2 
ZNF182                0.055   zinc finger protein 21 isoform 1 
ZNF502                0.055   zinc finger protein 502 
ZNF502                0.055   zinc finger protein 502 
ZNF502                0.055   zinc finger protein 502 
ZNF502                0.055   zinc finger protein 502 
ZNF569                0.055   zinc finger protein 569 
ZNF845                0.054   zinc finger protein 845 
ZNF624                0.054   zinc finger protein 624 
ZNF420                0.054   zinc finger protein 420 
ZNF567                0.054   zinc finger protein 567 
ZNF544                0.054   zinc finger protein 544 
ZNF311                0.054   zinc finger protein 311 
ZNF778                0.054   zinc finger protein 778 
ZNF91                 0.054   zinc finger protein 91 
ZNF782                0.054   zinc finger protein 782 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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