Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: THAP11 Sequence: fasta or formatted (314aa) NCBI GI: 40354197
Description:

THAP domain containing 11

Referenced in:

Protein Composition and Structure
Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.8         37           7
 C cysteine            1.9          6           2
 D aspartate           2.9          9           1
 E glutamate           6.4         20           3
 F phenylalanine       2.9          9           1
 G glycine             6.4         20           2
 H histidine           2.2          7           1
 I isoleucine          1.9          6           1
 K lysine              4.5         14           2
 L leucine             8.6         27           2
 M methionine          2.2          7           1
 N asparagine          1.9          6           2
 P proline             5.4         17           1
 Q glutamine          13.1         41          29
 R arginine            7.0         22           3
 S serine              6.7         21           2
 T threonine           6.4         20           2
 V valine              6.4         20           3
 W tryptophan          0.3          1           1
 Y tyrosine            1.3          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   THAP domain containing 11 
TBP                   0.088   TATA box binding protein 
MAML2                 0.082   mastermind-like 2 
EP400                 0.074   E1A binding protein p400 
FOXP2                 0.072   forkhead box P2 isoform I 
FOXP2                 0.072   forkhead box P2 isoform III 
FOXP2                 0.072   forkhead box P2 isoform II 
C14orf4               0.072   chromosome 14 open reading frame 4 
MED12                 0.071   mediator complex subunit 12 
SMARCA2               0.067   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.067   SWI/SNF-related matrix-associated actin-dependent re...
NCOA3                 0.066   nuclear receptor coactivator 3 isoform b 
FRMPD3                0.066   PREDICTED: FERM and PDZ domain containing 3 
FRMPD3                0.066   PREDICTED: FERM and PDZ domain containing 3 
FRMPD3                0.066   PREDICTED: FERM and PDZ domain containing 3 
MN1                   0.066   meningioma  1 
BMP2K                 0.064   BMP-2 inducible kinase isoform a 
BMP2K                 0.064   BMP-2 inducible kinase isoform b 
NCOA3                 0.062   nuclear receptor coactivator 3 isoform a 
NCOA6                 0.062   nuclear receptor coactivator 6 
MLL2                  0.059   myeloid/lymphoid or mixed-lineage leukemia 2 
AR                    0.059   androgen receptor isoform 1 
FAM155A               0.056   family with sequence similarity 155, member A [Homo...
ATXN1                 0.054   ataxin 1 
ATXN1                 0.054   ataxin 1 
ATXN2                 0.054   ataxin 2 
RUNX2                 0.052   runt-related transcription factor 2 isoform b [Homo...
RUNX2                 0.052   runt-related transcription factor 2 isoform a [Homo...
RUNX2                 0.052   runt-related transcription factor 2 isoform c 
MAML3                 0.052   mastermind-like 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press