Guide to the Human Genome
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Name: FAM5C Sequence: fasta or formatted (766aa) NCBI GI: 39979638
Description:

family with sequence similarity 5, member C

Referenced in:

Neurons

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4         34           2
 C cysteine            3.1         24           1
 D aspartate           4.8         37           1
 E glutamate           5.9         45           2
 F phenylalanine       5.0         38           2
 G glycine             4.2         32           2
 H histidine           2.5         19           2
 I isoleucine          4.7         36           1
 K lysine              5.0         38           2
 L leucine            12.5         96           2
 M methionine          2.3         18           1
 N asparagine          5.4         41           2
 P proline             4.3         33           2
 Q glutamine           4.6         35           2
 R arginine            6.3         48           2
 S serine              9.1         70           3
 T threonine           6.4         49           2
 V valine              3.9         30           2
 W tryptophan          2.1         16           1
 Y tyrosine            3.5         27           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   family with sequence similarity 5, member C 
FAM5B                 0.720   family with sequence similarity 5, member B 
DBC1                  0.518   deleted in bladder cancer 1 
C7                    0.009   complement component 7 precursor 
CRELD2                0.006   cysteine-rich with EGF-like domains 2 isoform b [Ho...
ASTN2                 0.006   astrotactin 2 isoform c 
ASTN2                 0.006   astrotactin 2 isoform b 
ASTN2                 0.006   astrotactin 2 isoform a 
TECTA                 0.006   tectorin alpha precursor 
LOC100292720          0.005   PREDICTED: hypothetical protein 
LOC100286893          0.005   PREDICTED: hypothetical protein 
LOC100286893          0.005   PREDICTED: hypothetical protein XP_002342344 
PCSK5                 0.005   proprotein convertase subtilisin/kexin type 5 prepro...
CRELD2                0.005   cysteine-rich with EGF-like domains 2 isoform a [Ho...
STAB1                 0.004   stabilin 1 precursor 
LOC100292811          0.003   PREDICTED: similar to proprotein convertase subtili...
LOC100290671          0.003   PREDICTED: hypothetical protein XP_002347099 
LOC100289618          0.003   PREDICTED: hypothetical protein XP_002342982 
C2orf16               0.003   hypothetical protein LOC84226 
C8A                   0.003   complement component 8, alpha polypeptide precursor [...
RIMKLB                0.003   ribosomal modification protein rimK-like family mem...
FRAS1                 0.003   Fraser syndrome 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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