Guide to the Human Genome
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Name: PYGO1 Sequence: fasta or formatted (419aa) NCBI GI: 30911103
Description:

pygopus homolog 1

Referenced in:

B cells
Protein Composition and Structure

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         31           2
 C cysteine            2.1          9           1
 D aspartate           4.8         20           2
 E glutamate           3.1         13           1
 F phenylalanine       4.3         18           1
 G glycine             7.4         31           2
 H histidine           3.3         14           1
 I isoleucine          1.7          7           1
 K lysine              3.6         15           3
 L leucine             4.5         19           2
 M methionine          2.1          9           1
 N asparagine         11.9         50           3
 P proline            12.6         53           3
 Q glutamine           5.0         21           1
 R arginine            3.3         14           1
 S serine             10.5         44           3
 T threonine           5.3         22           2
 V valine              3.6         15           1
 W tryptophan          0.5          2           1
 Y tyrosine            2.9         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   pygopus homolog 1 
PYGO2                 0.247   pygopus homolog 2 
ZMIZ1                 0.022   retinoic acid induced 17 
C7orf11               0.021   chromosome 7 open reading frame 11 
PDCD6IP               0.021   programmed cell death 6 interacting protein isoform...
PDCD6IP               0.021   programmed cell death 6 interacting protein isoform ...
SMARCC2               0.019   SWI/SNF-related matrix-associated actin-dependent re...
ARID1A                0.019   AT rich interactive domain 1A isoform a 
ARID1A                0.019   AT rich interactive domain 1A isoform b 
KDM5B                 0.018   jumonji, AT rich interactive domain 1B 
PTPN23                0.018   protein tyrosine phosphatase, non-receptor type 23 [...
RBBP6                 0.018   retinoblastoma-binding protein 6 isoform 2 
SEC24C                0.018   SEC24-related protein C 
SEC24C                0.018   SEC24-related protein C 
RXRB                  0.017   retinoid X receptor, beta 
WIPF1                 0.017   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.017   WAS/WASL interacting protein family, member 1 
BCL9L                 0.017   B-cell CLL/lymphoma 9-like 
SHANK1                0.017   SH3 and multiple ankyrin repeat domains 1 
WHSC1                 0.017   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.017   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.017   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.017   Wolf-Hirschhorn syndrome candidate 1 protein isofor...
DSPP                  0.017   dentin sialophosphoprotein preproprotein 
SUPT5H                0.017   suppressor of Ty 5 homolog isoform b 
SUPT5H                0.017   suppressor of Ty 5 homolog isoform a 
SUPT5H                0.017   suppressor of Ty 5 homolog isoform a 
SUPT5H                0.017   suppressor of Ty 5 homolog isoform a 
GRINA                 0.017   glutamate receptor, ionotropic, N-methyl D-aspartate...
GRINA                 0.017   glutamate receptor, ionotropic, N-methyl D-aspartate...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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