Guide to the Human Genome
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Name: CNOT6 Sequence: fasta or formatted (557aa) NCBI GI: 28872863
Description:

CCR4-NOT transcription complex, subunit 6

Referenced in:

RNA Polymerase and General Transcription Factors
RNases and RNA Stability

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         25           2
 C cysteine            1.4          8           1
 D aspartate           4.1         23           1
 E glutamate           6.8         38           2
 F phenylalanine       3.9         22           2
 G glycine             5.7         32           2
 H histidine           3.2         18           2
 I isoleucine          4.8         27           2
 K lysine              5.9         33           2
 L leucine            13.8         77           3
 M methionine          2.7         15           2
 N asparagine          6.1         34           3
 P proline             5.4         30           3
 Q glutamine           3.4         19           1
 R arginine            4.7         26           2
 S serine              8.3         46           2
 T threonine           5.4         30           2
 V valine              4.7         26           2
 W tryptophan          1.3          7           1
 Y tyrosine            3.8         21           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CCR4-NOT transcription complex, subunit 6 
CNOT6L                0.787   CCR4-NOT transcription complex, subunit 6-like [Hom...
PDE12                 0.102   phosphodiesterase 12 
ANGEL1                0.074   angel homolog 1 
ANGEL2                0.069   LOC90806 protein 
CCRN4L                0.059   CCR4 carbon catabolite repression 4-like 
LRRC58                0.046   leucine rich repeat containing 58 
RSU1                  0.044   ras suppressor protein 1 isoform 1 
RSU1                  0.044   ras suppressor protein 1 isoform 2 
LRRC1                 0.044   leucine rich repeat containing 1 
LRRC59                0.042   leucine rich repeat containing 59 
LRRC8D                0.042   leucine rich repeat containing 8 family, member D [...
LRRC8D                0.042   leucine rich repeat containing 8 family, member D [H...
SCRIB                 0.042   scribble isoform b 
SCRIB                 0.042   scribble isoform a 
LRRC8A                0.041   leucine rich repeat containing 8 family, member A [H...
LRRC8A                0.041   leucine rich repeat containing 8 family, member A [...
LRRC8A                0.041   leucine rich repeat containing 8 family, member A [...
LRRC40                0.040   leucine rich repeat containing 40 
ERBB2IP               0.040   ERBB2 interacting protein isoform 7 
ERBB2IP               0.040   ERBB2 interacting protein isoform 2 
SHOC2                 0.038   soc-2 suppressor of clear homolog 
LRSAM1                0.038   leucine rich repeat and sterile alpha motif containi...
LRSAM1                0.038   leucine rich repeat and sterile alpha motif containi...
LRSAM1                0.038   leucine rich repeat and sterile alpha motif containi...
PHLPP2                0.036   PH domain and leucine rich repeat protein phosphatas...
LRDD                  0.036   leucine rich repeat and death domain containing prot...
LRDD                  0.036   leucine rich repeat and death domain containing prot...
LRDD                  0.036   leucine rich repeat and death domain containing prot...
LRRC7                 0.035   leucine rich repeat containing 7 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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