Guide to the Human Genome
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Name: SSX2 Sequence: fasta or formatted (223aa) NCBI GI: 27659724
Description:

synovial sarcoma, X breakpoint 2 isoform a

Referenced in:

Additional Genes in Development

Other entries for this name:
alt prot [188aa] synovial sarcoma, X breakpoint 2 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         14           1
 C cysteine            1.3          3           1
 D aspartate           5.4         12           2
 E glutamate           9.4         21           2
 F phenylalanine       4.0          9           1
 G glycine             8.5         19           2
 H histidine           2.2          5           1
 I isoleucine          4.0          9           1
 K lysine              9.4         21           2
 L leucine             2.7          6           1
 M methionine          4.0          9           1
 N asparagine          6.3         14           1
 P proline             8.1         18           2
 Q glutamine           4.0          9           1
 R arginine            6.7         15           2
 S serine              5.8         13           2
 T threonine           5.8         13           2
 V valine              2.7          6           1
 W tryptophan          1.3          3           1
 Y tyrosine            1.8          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   synovial sarcoma, X breakpoint 2 isoform a 
SSX2B                 0.679   PREDICTED: synovial sarcoma, X breakpoint 2B 
SSX2                  0.679   synovial sarcoma, X breakpoint 2 isoform b 
SSX3                  0.591   synovial sarcoma, X breakpoint 3 isoform a 
SSX3                  0.589   synovial sarcoma, X breakpoint 3 isoform b 
SSX9                  0.564   synovial sarcoma, X breakpoint 9 
SSX5                  0.551   synovial sarcoma, X breakpoint 5 isoform b 
SSX7                  0.544   synovial sarcoma, X breakpoint 7 
SSX5                  0.503   synovial sarcoma, X breakpoint 5 isoform a 
SSX4                  0.497   synovial sarcoma, X breakpoint 4 isoform a 
SSX4B                 0.497   synovial sarcoma, X breakpoint 4B isoform a 
SSX6                  0.494   synovial sarcoma, X breakpoint 6 
SSX1                  0.474   synovial sarcoma, X breakpoint 1 
SSX4                  0.333   synovial sarcoma, X breakpoint 4 isoform b 
SSX4B                 0.333   synovial sarcoma, X breakpoint 4B isoform b 
LOC100291196          0.166   PREDICTED: hypothetical protein XP_002348195 
PRDM9                 0.110   PR domain containing 9 
PRDM7                 0.103   PR domain containing 7 isoform 1 
LOC100293029          0.052   PREDICTED: similar to zinc finger protein 30 
LOC100290062          0.052   PREDICTED: hypothetical protein XP_002346980 
LOC100289678          0.052   PREDICTED: hypothetical protein XP_002342831 
LOC100289678          0.052   PREDICTED: similar to zinc finger protein 30 
ZNF688                0.047   zinc finger protein 688 isoform a 
ZNF777                0.040   zinc finger protein 777 
ZNF425                0.040   zinc finger protein 425 
ZNF398                0.040   zinc finger 398 isoform a 
ZNF789                0.031   zinc finger protein 789 isoform 1 
ZNF132                0.031   zinc finger protein 132 
POGK                  0.031   pogo transposable element with KRAB domain 
ZNF786                0.031   zinc finger protein 786 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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