Guide to the Human Genome
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Name: LOC100292185 Sequence: fasta or formatted (139aa) NCBI GI: 239758109
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5          9           1
 C cysteine            2.2          3           1
 D aspartate           2.9          4           1
 E glutamate           7.9         11           2
 F phenylalanine       3.6          5           1
 G glycine            11.5         16           2
 H histidine           2.2          3           1
 I isoleucine          1.4          2           1
 K lysine              4.3          6           1
 L leucine             7.2         10           1
 M methionine          1.4          2           1
 N asparagine          1.4          2           1
 P proline             5.8          8           1
 Q glutamine           4.3          6           2
 R arginine            7.9         11           1
 S serine             13.7         19           2
 T threonine           3.6          5           1
 V valine              7.2         10           1
 W tryptophan          4.3          6           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290838          0.989   PREDICTED: hypothetical protein XP_002347325 
LOC100287759          0.206   PREDICTED: hypothetical protein XP_002342960 
MTMR14                0.015   jumpy isoform 1 
CRYBB3                0.011   crystallin, beta B3 
COL2A1                0.007   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.007   collagen, type II, alpha 1 isoform 2 precursor [Hom...
ICK                   0.007   intestinal cell kinase 
ICK                   0.007   intestinal cell kinase 
ANKRD60               0.007   PREDICTED: ankyrin repeat domain 60 
PPP1R15A              0.007   protein phosphatase 1, regulatory subunit 15A [Homo...
LOC100289775          0.004   PREDICTED: hypothetical protein XP_002348164 
MAP7                  0.004   microtubule-associated protein 7 
PHF3                  0.004   PHD finger protein 3 
EBF4                  0.004   early B-cell factor 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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