Guide to the Human Genome
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Name: LOC100291934 Sequence: fasta or formatted (64aa) NCBI GI: 239755319
Description:

PREDICTED: similar to cytochrome c oxidase subunit II

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7          3           1
 C cysteine            0.0          0           0
 D aspartate           4.7          3           1
 E glutamate           6.2          4           2
 F phenylalanine       4.7          3           1
 G glycine             1.6          1           1
 H histidine           7.8          5           1
 I isoleucine         14.1          9           3
 K lysine              1.6          1           1
 L leucine            17.2         11           2
 M methionine          3.1          2           1
 N asparagine          0.0          0           0
 P proline             3.1          2           1
 Q glutamine           4.7          3           1
 R arginine            0.0          0           0
 S serine              7.8          5           2
 T threonine          12.5          8           2
 V valine              4.7          3           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to cytochrome c oxidase subunit ... 
LOC100291321          1.000   PREDICTED: hypothetical protein XP_002347169 
LOC100287996          1.000   PREDICTED: hypothetical protein XP_002343062 
LOC100293518          0.802   PREDICTED: similar to Cytochrome c oxidase subunit ...
LOC100291549          0.802   PREDICTED: hypothetical protein XP_002347252 
LOC100289139          0.802   PREDICTED: hypothetical protein XP_002343117 
LOC100292806          0.772   PREDICTED: similar to Cytochrome c oxidase subunit ...
LOC100289854          0.772   PREDICTED: hypothetical protein XP_002346519 
LOC100288334          0.772   PREDICTED: hypothetical protein XP_002342327 
LOC100292526          0.733   PREDICTED: similar to Cytochrome c oxidase subunit ...
LOC100287564          0.733   PREDICTED: similar to Cytochrome c oxidase subunit ...
LOC100287564          0.733   PREDICTED: hypothetical protein XP_002342515 
LOC100292899          0.723   PREDICTED: similar to cytochrome c oxidase subunit ...
LOC100290942          0.723   PREDICTED: hypothetical protein XP_002346731 
LOC100289160          0.723   PREDICTED: hypothetical protein XP_002342599 
LOC100292744          0.653   PREDICTED: similar to Cytochrome c oxidase subunit ...
LOC100289404          0.653   PREDICTED: hypothetical protein XP_002342601 
COX2                  0.634   cytochrome c oxidase subunit II 
COX2                  0.624   cytochrome c oxidase subunit II 
LOC100293197          0.535   PREDICTED: similar to cytochrome c oxidase subunit ...
LOC100290105          0.535   PREDICTED: hypothetical protein XP_002346674 
LOC100288304          0.535   PREDICTED: hypothetical protein XP_002342519 
LOC100291986          0.525   PREDICTED: hypothetical protein XP_002345402 
LOC100290244          0.525   PREDICTED: hypothetical protein XP_002346644 
LOC100287317          0.525   PREDICTED: hypothetical protein XP_002342139 
LOC100293872          0.475   PREDICTED: hypothetical protein 
LOC100291574          0.446   PREDICTED: hypothetical protein XP_002345618 
LOC730037             0.426   PREDICTED: hypothetical protein 
LOC100287418          0.426   PREDICTED: hypothetical protein XP_002342289 
SLC39A9               0.050   solute carrier family 39 (zinc transporter), member ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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