Guide to the Human Genome
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Name: LOC100293353 Sequence: fasta or formatted (264aa) NCBI GI: 239754871
Description:

PREDICTED: similar to Coiled-coil domain-containing protein 144C

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.8         10           1
 C cysteine            0.0          0           0
 D aspartate           4.2         11           2
 E glutamate          14.0         37           3
 F phenylalanine       1.9          5           1
 G glycine             4.9         13           2
 H histidine           3.0          8           1
 I isoleucine          4.9         13           1
 K lysine             12.9         34           2
 L leucine            11.7         31           2
 M methionine          2.7          7           1
 N asparagine          6.8         18           2
 P proline             1.5          4           1
 Q glutamine           4.5         12           2
 R arginine            5.3         14           1
 S serine              6.4         17           2
 T threonine           5.3         14           2
 V valine              3.4          9           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.7          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Coiled-coil domain-containing... 
LOC100287980          1.000   PREDICTED: similar to Coiled-coil domain-containing...
LOC100287980          1.000   PREDICTED: hypothetical protein XP_002342885 
CCDC144A              0.333   coiled-coil domain containing 144A 
POTED                 0.323   pote protein 
LOC100288966          0.318   PREDICTED: hypothetical protein XP_002343915 isofor...
LOC100288966          0.318   PREDICTED: hypothetical protein XP_002343914 isofor...
ANKRD26               0.316   ankyrin repeat domain 26 
POTEB                 0.310   protein expressed in prostate, ovary, testis, and pl...
LOC100287399          0.306   PREDICTED: hypothetical protein XP_002343353 
LOC653269             0.302   PREDICTED: similar to protein expressed in prostate...
ACTBL3                0.294   PREDICTED: actin, beta-like 3 
ACTBL3                0.294   PREDICTED: actin, beta-like 3 
ACTBL3                0.294   PREDICTED: kappa-actin 
ANKRD20A3             0.270   ankyrin repeat domain 20 family, member A3 
ANKRD20A2             0.268   ankyrin repeat domain 20 family, member A2 
ANKRD20A4             0.268   ankyrin repeat domain 20 family, member A4 
ANKRD30A              0.266   ankyrin repeat domain 30A 
ANKRD20A1             0.266   ankyrin repeat domain 20 family, member A1 
ANKRD20A5             0.258   PREDICTED: ankyrin repeat domain 20 family, member ...
ANKRD20A5             0.258   PREDICTED: ankyrin repeat domain 20 family, member ...
ANKRD62               0.254   PREDICTED: ankyrin repeat domain 62 isoform 1 [Homo...
ANKRD62               0.252   PREDICTED: ankyrin repeat domain 62 
ANKRD62               0.252   PREDICTED: ankyrin repeat domain 62 isoform 4 [Homo...
POTEF                 0.245   prostate, ovary, testis expressed protein on chromo...
ANKRD30B              0.233   ankyrin repeat domain 30B 
LOC653781             0.225   PREDICTED: similar to protein expressed in prostate...
POTEC                 0.207   ANKRD26-like family B, member 2 
ANKRD36B              0.203   ankyrin repeat domain 36B 
LOC400986             0.201   PREDICTED: protein immuno-reactive with anti-PTH po...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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