Guide to the Human Genome
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Name: LOC100292877 Sequence: fasta or formatted (414aa) NCBI GI: 239754399
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.0         58           5
 C cysteine            1.7          7           1
 D aspartate           2.2          9           1
 E glutamate           4.8         20           2
 F phenylalanine       3.9         16           2
 G glycine             8.0         33           2
 H histidine           1.7          7           2
 I isoleucine          1.9          8           1
 K lysine              4.8         20           1
 L leucine             7.7         32           4
 M methionine          1.0          4           1
 N asparagine          2.4         10           2
 P proline             9.4         39           5
 Q glutamine           5.8         24           3
 R arginine           11.6         48           3
 S serine              7.5         31           2
 T threonine           4.8         20           2
 V valine              4.3         18           1
 W tryptophan          1.4          6           1
 Y tyrosine            1.0          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291270          1.000   PREDICTED: hypothetical protein XP_002346869 
LOC100287955          1.000   PREDICTED: hypothetical protein XP_002342711 
UNCX                  0.030   UNC homeobox 
COL8A2                0.026   collagen, type VIII, alpha 2 
LOC100290372          0.025   PREDICTED: hypothetical protein XP_002346788 
LOC100288606          0.025   PREDICTED: hypothetical protein XP_002342652 
LOC645602             0.023   PREDICTED: hypothetical protein 
LOC645602             0.023   PREDICTED: hypothetical protein 
LOC645602             0.023   PREDICTED: hypothetical protein 
SAMD1                 0.023   sterile alpha motif domain containing 1 
LOC100294413          0.021   PREDICTED: hypothetical protein 
LOC100293375          0.020   PREDICTED: hypothetical protein 
LOC100288131          0.020   PREDICTED: hypothetical protein 
LOC100288131          0.020   PREDICTED: hypothetical protein XP_002343331 
SPEG                  0.018   SPEG complex locus 
PRR12                 0.018   proline rich 12 
LOC100293327          0.017   PREDICTED: hypothetical protein 
LOC100291252          0.017   PREDICTED: hypothetical protein XP_002347634 
LOC100287254          0.017   PREDICTED: hypothetical protein XP_002343484 
COL11A2               0.017   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.017   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.017   collagen, type XI, alpha 2 isoform 1 preproprotein ...
LMTK3                 0.017   lemur tyrosine kinase 3 
BCR                   0.017   breakpoint cluster region isoform 2 
BCR                   0.017   breakpoint cluster region isoform 1 
LOC100290430          0.017   PREDICTED: hypothetical protein XP_002346632 
CACNA1B               0.017   calcium channel, voltage-dependent, N type, alpha 1B ...
COL27A1               0.017   collagen, type XXVII, alpha 1 
SCAF1                 0.016   SR-related CTD-associated factor 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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