Guide to the Human Genome
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Name: LOC100294039 Sequence: fasta or formatted (340aa) NCBI GI: 239753530
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         31           2
 C cysteine            2.4          8           1
 D aspartate           3.2         11           1
 E glutamate           3.5         12           2
 F phenylalanine       2.6          9           1
 G glycine             8.2         28           2
 H histidine           4.4         15           2
 I isoleucine          2.9         10           1
 K lysine              3.5         12           1
 L leucine             7.1         24           2
 M methionine          3.8         13           2
 N asparagine          1.2          4           1
 P proline             8.5         29           3
 Q glutamine           4.4         15           1
 R arginine            7.1         24           2
 S serine             10.6         36           2
 T threonine           9.1         31           2
 V valine              5.0         17           1
 W tryptophan          1.8          6           1
 Y tyrosine            1.5          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100287476          1.000   PREDICTED: hypothetical protein XP_002342375 
KIAA1804              0.012   mixed lineage kinase 4 
TNS1                  0.010   tensin 
DMRT1                 0.010   doublesex and mab-3 related transcription factor 1 [...
LOC100127891          0.009   PREDICTED: hypothetical protein 
LOC100127891          0.009   PREDICTED: similar to hCG2042508 
LOC100127891          0.009   PREDICTED: similar to hCG2042508 
LOC100127891          0.009   PREDICTED: similar to hCG2042508 
C1orf116              0.009   specifically androgen-regulated protein isoform 1 [...
MDC1                  0.007   mediator of DNA-damage checkpoint 1 
SEZ6L2                0.006   seizure related 6 homolog (mouse)-like 2 isoform 4 ...
SEZ6L2                0.006   seizure related 6 homolog (mouse)-like 2 isoform 3 ...
SEZ6L2                0.006   seizure related 6 homolog (mouse)-like 2 isoform 2 ...
SEZ6L2                0.006   seizure related 6 homolog (mouse)-like 2 isoform 1 [H...
SS18                  0.006   synovial sarcoma translocation, chromosome 18 isofor...
SS18                  0.006   synovial sarcoma translocation, chromosome 18 isofor...
ESRP1                 0.006   RNA binding motif protein 35A isoform 5 
ESRP1                 0.006   RNA binding motif protein 35A isoform 3 
ESRP1                 0.006   RNA binding motif protein 35A isoform 4 
ESRP1                 0.006   RNA binding motif protein 35A isoform 2 
ESRP1                 0.006   RNA binding motif protein 35A isoform 1 
LYST                  0.006   lysosomal trafficking regulator 
ODF3L1                0.006   outer dense fiber of sperm tails 3-like 1 
DENND1A               0.004   DENN/MADD domain containing 1A isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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