Guide to the Human Genome
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Name: LOC100288110 Sequence: fasta or formatted (591aa) NCBI GI: 239749768
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {591aa} PREDICTED: hypothetical protein XP_002343007
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0         65           3
 C cysteine            1.7         10           1
 D aspartate           3.7         22           2
 E glutamate           4.1         24           2
 F phenylalanine       2.0         12           2
 G glycine             9.5         56           2
 H histidine           2.7         16           2
 I isoleucine          1.4          8           1
 K lysine              5.4         32           5
 L leucine             8.8         52           2
 M methionine          1.4          8           2
 N asparagine          2.2         13           1
 P proline             9.6         57           4
 Q glutamine           4.7         28           3
 R arginine           11.3         67           3
 S serine              7.6         45           2
 T threonine           5.9         35           2
 V valine              4.4         26           2
 W tryptophan          1.7         10           1
 Y tyrosine            0.8          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100288110          1.000   PREDICTED: hypothetical protein XP_002343007 
LOC729575             0.441   PREDICTED: hypothetical protein 
LOC100129852          0.019   PREDICTED: hypothetical protein 
LOC100129852          0.019   PREDICTED: hypothetical protein 
LOC100129852          0.019   PREDICTED: hypothetical protein 
LOC100133885          0.019   PREDICTED: hypothetical protein 
BBC3                  0.016   BCL2 binding component 3 isoform 1 
LOC100129098          0.016   PREDICTED: hypothetical protein 
FAM148B               0.015   nuclear localized factor 2 
LOC389333             0.015   hypothetical protein LOC389333 
GAS2L1                0.015   growth arrest-specific 2 like 1 isoform a 
GAS2L1                0.015   growth arrest-specific 2 like 1 isoform a 
LOC100290274          0.014   PREDICTED: hypothetical protein XP_002346984 
LOC100288645          0.014   PREDICTED: hypothetical protein XP_002342846 
FLJ22184              0.014   PREDICTED: hypothetical protein FLJ22184 
LOC100130128          0.014   PREDICTED: hypothetical protein 
LOC100291071          0.014   PREDICTED: hypothetical protein XP_002346951 
FLJ22184              0.014   PREDICTED: hypothetical protein LOC80164 
LOC100287198          0.014   PREDICTED: hypothetical protein XP_002342815 
LOC100287198          0.014   PREDICTED: hypothetical protein 
GGN                   0.014   gametogenetin 
LOC100129129          0.014   PREDICTED: hypothetical protein 
LOC100127891          0.014   PREDICTED: hypothetical protein 
LOC100293596          0.014   PREDICTED: similar to mucin 
LOC100130128          0.014   PREDICTED: hypothetical protein 
LOC100287104          0.014   PREDICTED: hypothetical protein XP_002343630 
LOC100130128          0.014   PREDICTED: hypothetical protein 
KIF22                 0.014   kinesin family member 22 
SH3BP1                0.014   SH3-domain binding protein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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