Guide to the Human Genome
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Name: URG4 Sequence: fasta or formatted (888aa) NCBI GI: 117968345
Description:

up-regulated gene 4 isoform 2

Referenced in:

BCL2 Pathways, Caspases, and Programmed Cell Death

Other entries for this name:
alt prot [931aa] up-regulated gene 4 isoform 3
alt prot [922aa] up-regulated gene 4 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         61           3
 C cysteine            1.5         13           1
 D aspartate           6.1         54           2
 E glutamate           6.6         59           3
 F phenylalanine       4.3         38           2
 G glycine             6.3         56           2
 H histidine           2.4         21           1
 I isoleucine          4.1         36           2
 K lysine              4.4         39           2
 L leucine            13.5        120           3
 M methionine          2.5         22           1
 N asparagine          3.2         28           1
 P proline             5.9         52           2
 Q glutamine           4.5         40           2
 R arginine            7.3         65           3
 S serine              7.3         65           2
 T threonine           3.9         35           2
 V valine              5.6         50           2
 W tryptophan          2.0         18           2
 Y tyrosine            1.8         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   up-regulated gene 4 isoform 2 
URG4                  1.000   up-regulated gene 4 isoform 1 
URG4                  1.000   up-regulated gene 4 isoform 3 
CARD6                 0.110   caspase recruitment domain family, member 6 
LRRC59                0.006   leucine rich repeat containing 59 
RAB3IP                0.005   RAB3A interacting protein isoform beta 2 
RAB3IP                0.005   RAB3A interacting protein isoform beta 1 
RAB3IP                0.005   RAB3A interacting protein isoform alpha 2 
RAB3IP                0.005   RAB3A interacting protein isoform alpha 1 
RAB11FIP4             0.005   RAB11 family interacting protein 4 (class II) 
MYH9                  0.005   myosin, heavy polypeptide 9, non-muscle 
LOC100128127          0.005   PREDICTED: hypothetical protein 
LOC100128127          0.005   PREDICTED: hypothetical protein 
LOC100128127          0.005   PREDICTED: hypothetical protein 
LZTS1                 0.004   leucine zipper, putative tumor suppressor 1 
DIAPH2                0.004   diaphanous 2 isoform 12C 
DIAPH2                0.004   diaphanous 2 isoform 156 
UBXN4                 0.004   UBX domain containing 2 
LSG1                  0.004   large subunit GTPase 1 
FILIP1                0.003   filamin A interacting protein 1 
MYH7                  0.003   myosin, heavy chain 7, cardiac muscle, beta 
LOC728888             0.003   PREDICTED: similar to acyl-CoA synthetase medium-ch...
MTG1                  0.003   GTP_binding protein 
ASPM                  0.003   asp (abnormal spindle)-like, microcephaly associate...
WDFY3                 0.003   WD repeat and FYVE domain containing 3 isoform 1 [Ho...
WDFY3                 0.003   WD repeat and FYVE domain containing 3 isoform 2 [Ho...
C20orf195             0.003   hypothetical protein LOC79025 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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