Guide to the Human Genome
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Name: SLC8A1 Sequence: fasta or formatted (973aa) NCBI GI: 10863913
Description:

solute carrier family 8 (sodium/calcium exchanger), member 1 isoform A

Referenced in:

Solute Carrier Families

Other entries for this name:
alt prot [968aa] solute carrier family 8 (sodium/calcium exchanger), member 1 isof...
alt prot [960aa] solute carrier family 8 (sodium/calcium exchanger), member 1 isof...
alt prot [937aa] solute carrier family 8 (sodium/calcium exchanger), member 1 isof...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         66           2
 C cysteine            1.5         15           1
 D aspartate           5.1         50           5
 E glutamate           8.9         87           4
 F phenylalanine       6.3         61           4
 G glycine             7.4         72           3
 H histidine           2.2         21           1
 I isoleucine          7.6         74           3
 K lysine              5.0         49           2
 L leucine             8.1         79           3
 M methionine          2.0         19           1
 N asparagine          3.2         31           1
 P proline             3.0         29           2
 Q glutamine           2.3         22           3
 R arginine            4.1         40           3
 S serine              6.2         60           2
 T threonine           7.3         71           2
 V valine              8.9         87           2
 W tryptophan          1.2         12           1
 Y tyrosine            2.9         28           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 8 (sodium/calcium exchanger), ... 
SLC8A1                0.991   solute carrier family 8 (sodium/calcium exchanger),...
SLC8A1                0.960   solute carrier family 8 (sodium/calcium exchanger),...
SLC8A1                0.932   solute carrier family 8 (sodium/calcium exchanger),...
SLC8A3                0.679   solute carrier family 8 (sodium/calcium exchanger), ...
SLC8A3                0.674   solute carrier family 8 (sodium/calcium exchanger), ...
SLC8A3                0.673   solute carrier family 8 (sodium/calcium exchanger), ...
SLC8A3                0.672   solute carrier family 8 (sodium/calcium exchanger), ...
SLC8A2                0.620   solute carrier family 8 member 2 
SLC8A3                0.235   solute carrier family 8 (sodium/calcium exchanger),...
SLC8A3                0.233   solute carrier family 8 (sodium/calcium exchanger), ...
GPR98                 0.032   G protein-coupled receptor 98 precursor 
FREM3                 0.026   PREDICTED: FRAS1 related extracellular matrix 3 [Ho...
FREM3                 0.026   PREDICTED: FRAS1 related extracellular matrix 3 [Ho...
FREM3                 0.026   PREDICTED: FRAS1 related extracellular matrix 3 [Ho...
FREM2                 0.024   FRAS1-related extracellular matrix protein 2 precurs...
FRAS1                 0.023   Fraser syndrome 1 
SLC24A3               0.022   solute carrier family 24 (sodium/potassium/calcium e...
SLC24A4               0.021   solute carrier family 24 member 4 isoform 3 
SLC24A4               0.021   solute carrier family 24 member 4 isoform 2 precurso...
SLC24A4               0.021   solute carrier family 24 member 4 isoform 1 precurso...
SLC24A5               0.020   solute carrier family 24, member 5 
SLC24A2               0.018   solute carrier family 24 (sodium/potassium/calcium ex...
ITGB4                 0.014   integrin beta 4 isoform 2 precursor 
ITGB4                 0.014   integrin beta 4 isoform 1 precursor 
ITGB4                 0.014   integrin beta 4 isoform 3 precursor 
SLC24A1               0.014   solute carrier family 24 (sodium/potassium/calcium ex...
FREM1                 0.010   FRAS1 related extracellular matrix 1 
SLC24A6               0.006   solute carrier family 24 member 6 
ANO2                  0.006   anoctamin 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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