Guide to the Human Genome
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Name: LOC100133042 Sequence: fasta or formatted (162aa) NCBI GI: 239744544
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {162aa} PREDICTED: hypothetical protein
alt mRNA {162aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.1         18           2
 C cysteine            1.2          2           1
 D aspartate           1.2          2           1
 E glutamate           3.1          5           1
 F phenylalanine       6.2         10           1
 G glycine             5.6          9           1
 H histidine           0.6          1           1
 I isoleucine          1.2          2           1
 K lysine              2.5          4           1
 L leucine             9.9         16           2
 M methionine          8.6         14           2
 N asparagine          0.6          1           1
 P proline             9.3         15           2
 Q glutamine           1.9          3           1
 R arginine            6.2         10           2
 S serine             10.5         17           2
 T threonine           9.3         15           2
 V valine              6.8         11           2
 W tryptophan          3.1          5           1
 Y tyrosine            1.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100133042          1.000   PREDICTED: hypothetical protein 
LOC100133042          1.000   PREDICTED: hypothetical protein 
LOC100292723          0.026   PREDICTED: hypothetical protein 
LOC100288963          0.026   PREDICTED: hypothetical protein XP_002342546 
LOC100290128          0.023   PREDICTED: hypothetical protein XP_002346712 
LOC100133915          0.016   PREDICTED: hypothetical protein 
ACCN5                 0.016   amiloride-sensitive cation channel 5, intestinal [Ho...
MAP1S                 0.013   BPY2 interacting protein 1 
LOC100293247          0.013   PREDICTED: hypothetical protein 
LOC100290007          0.013   PREDICTED: hypothetical protein XP_002347553 
LOC100289059          0.013   PREDICTED: hypothetical protein XP_002343358 
KIAA0415              0.010   hypothetical protein LOC9907 
DRD1                  0.007   dopamine receptor D1 
ABCC2                 0.007   ATP-binding cassette, sub-family C (CFTR/MRP), member...
ABCB10                0.007   ATP-binding cassette, sub-family B, member 10 [Homo...
FEV                   0.007   FEV (ETS oncogene family) 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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