Guide to the Human Genome
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Name: ESRRB Sequence: fasta or formatted (508aa) NCBI GI: 238550159
Description:

estrogen-related receptor beta

Referenced in:

Nuclear Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         36           2
 C cysteine            3.0         15           1
 D aspartate           5.1         26           2
 E glutamate           6.3         32           2
 F phenylalanine       2.4         12           2
 G glycine             7.7         39           2
 H histidine           2.6         13           2
 I isoleucine          4.5         23           2
 K lysine              6.9         35           2
 L leucine            12.0         61           3
 M methionine          3.1         16           1
 N asparagine          1.6          8           1
 P proline             6.3         32           3
 Q glutamine           3.9         20           1
 R arginine            5.9         30           3
 S serine             10.0         51           2
 T threonine           3.5         18           2
 V valine              3.7         19           2
 W tryptophan          0.8          4           1
 Y tyrosine            3.5         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   estrogen-related receptor beta 
ESRRG                 0.670   estrogen-related receptor gamma isoform 2 
ESRRG                 0.670   estrogen-related receptor gamma isoform 2 
ESRRG                 0.670   estrogen-related receptor gamma isoform 1 
ESRRG                 0.670   estrogen-related receptor gamma isoform 2 
ESRRA                 0.446   estrogen-related receptor alpha 
ESR1                  0.231   estrogen receptor alpha isoform 4 
ESR1                  0.231   estrogen receptor alpha isoform 3 
ESR1                  0.231   estrogen receptor alpha isoform 2 
ESR1                  0.231   estrogen receptor alpha isoform 1 
ESR2                  0.212   estrogen receptor beta isoform 1 
ESR2                  0.191   estrogen receptor beta isoform 2 
ESR2                  0.191   estrogen receptor beta isoform 2 
RXRA                  0.188   retinoid X receptor, alpha 
RXRG                  0.187   retinoid X receptor, gamma isoform a 
RXRB                  0.186   retinoid X receptor, beta 
NR2F2                 0.169   nuclear receptor subfamily 2, group F, member 2 isof...
NR2F1                 0.166   nuclear receptor subfamily 2, group F, member 1 [Homo...
NR2F6                 0.165   nuclear receptor subfamily 2, group F, member 6 [Hom...
RARG                  0.162   retinoic acid receptor, gamma isoform 1 
HNF4A                 0.160   hepatocyte nuclear factor 4 alpha isoform d 
HNF4A                 0.159   hepatocyte nuclear factor 4 alpha isoform e 
HNF4A                 0.159   hepatocyte nuclear factor 4 alpha isoform b 
RARG                  0.159   retinoic acid receptor, gamma isoform 2 
HNF4A                 0.158   hepatocyte nuclear factor 4 alpha isoform a 
NR4A2                 0.158   nuclear receptor subfamily 4, group A, member 2 [Homo...
HNF4A                 0.157   hepatocyte nuclear factor 4 alpha isoform f 
HNF4A                 0.156   hepatocyte nuclear factor 4 alpha isoform c 
PGR                   0.153   progesterone receptor 
HNF4G                 0.151   hepatocyte nuclear factor 4, gamma 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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