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Search of human proteins with 23397672
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23397672 homeobox D4 [Homo sapiens]
(255 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23397672 homeobox D4 [Homo sapiens] 546 e-156
gi|24497538 homeobox C4 [Homo sapiens] 261 4e-70
gi|24497540 homeobox C4 [Homo sapiens] 261 4e-70
gi|13273315 homeobox B4 [Homo sapiens] 251 3e-67
gi|148613882 homeobox A4 [Homo sapiens] 235 3e-62
gi|24497517 homeobox A5 [Homo sapiens] 150 8e-37
gi|11321638 homeobox C5 [Homo sapiens] 142 4e-34
gi|4504469 homeobox B5 [Homo sapiens] 140 1e-33
gi|23503237 homeobox B6 [Homo sapiens] 135 3e-32
gi|85068580 homeobox B7 [Homo sapiens] 133 1e-31
gi|24497513 homeobox A3 isoform a [Homo sapiens] 127 9e-30
gi|13562112 homeobox A3 isoform a [Homo sapiens] 127 9e-30
gi|13489077 homeobox A6 [Homo sapiens] 127 1e-29
gi|19923391 homeobox D3 [Homo sapiens] 125 4e-29
gi|24497556 homeobox A7 [Homo sapiens] 122 3e-28
gi|15029506 homeobox D8 [Homo sapiens] 122 4e-28
gi|24497544 homeobox C6 isoform 2 [Homo sapiens] 118 4e-27
gi|4758554 homeobox C6 isoform 1 [Homo sapiens] 118 4e-27
gi|84570137 homeobox B3 [Homo sapiens] 116 2e-26
gi|4504465 homeobox B2 [Homo sapiens] 111 5e-25
gi|24497526 homeobox B1 [Homo sapiens] 110 2e-24
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens] 108 3e-24
gi|24497515 homeobox A3 isoform b [Homo sapiens] 102 4e-22
gi|13273317 homeobox B8 [Homo sapiens] 100 9e-22
gi|121114296 caudal type homeobox 1 [Homo sapiens] 100 1e-21
gi|10140847 homeobox A2 [Homo sapiens] 99 5e-21
gi|5031761 homeobox A1 isoform a [Homo sapiens] 99 5e-21
gi|12056969 homeobox C8 [Homo sapiens] 98 8e-21
gi|13375632 homeobox D1 [Homo sapiens] 93 2e-19
gi|182765442 homeobox A10 isoform a [Homo sapiens] 91 1e-18
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 546 bits (1406), Expect = e-156
Identities = 255/255 (100%), Positives = 255/255 (100%)
Query: 1 MVMSSYMVNSKYVDPKFPPCEEYLQGGYLGEQGADYYGGGAQGADFQPPGLYPRPDFGEQ 60
MVMSSYMVNSKYVDPKFPPCEEYLQGGYLGEQGADYYGGGAQGADFQPPGLYPRPDFGEQ
Sbjct: 1 MVMSSYMVNSKYVDPKFPPCEEYLQGGYLGEQGADYYGGGAQGADFQPPGLYPRPDFGEQ 60
Query: 61 PFGGSGPGPGSALPARGHGQEPGGPGGHYAAPGEPCPAPPAPPPAPLPGARAYSQSDPKQ 120
PFGGSGPGPGSALPARGHGQEPGGPGGHYAAPGEPCPAPPAPPPAPLPGARAYSQSDPKQ
Sbjct: 61 PFGGSGPGPGSALPARGHGQEPGGPGGHYAAPGEPCPAPPAPPPAPLPGARAYSQSDPKQ 120
Query: 121 PPSGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELEKEFHFNRYLT 180
PPSGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELEKEFHFNRYLT
Sbjct: 121 PPSGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELEKEFHFNRYLT 180
Query: 181 RRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKGRSSSSSSSSSCSSSVAPSQH 240
RRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKGRSSSSSSSSSCSSSVAPSQH
Sbjct: 181 RRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKGRSSSSSSSSSCSSSVAPSQH 240
Query: 241 LQPMAKDHHTDLTTL 255
LQPMAKDHHTDLTTL
Sbjct: 241 LQPMAKDHHTDLTTL 255
>gi|24497538 homeobox C4 [Homo sapiens]
Length = 264
Score = 261 bits (667), Expect = 4e-70
Identities = 147/271 (54%), Positives = 179/271 (66%), Gaps = 23/271 (8%)
Query: 1 MVMSSYMVNSKYVDPKFPPCEEYLQGGYLGEQGADYYGGGAQ-GADFQPPGLYP----RP 55
M+MSSY+++S Y+DPKFPPCEEY Q Y+ E +YYG + G LYP RP
Sbjct: 1 MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPPPRP 60
Query: 56 DFGEQPFGGSG-PGPGSALPARGHGQEPGGPGGHYAAPGEPC--PAPPAPPPA-PLPGAR 111
+ E+ + + GPG++ RGHG P G H+ + PAP + A P P
Sbjct: 61 SYPERQYSCTSLQGPGNS---RGHG--PAQAGHHHPEKSQSLCEPAPLSGASASPSPAPP 115
Query: 112 AYSQSDPKQPPSGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELEK 171
A SQ P P S A KQP +VYPWMKK+HV++VNPNY GGEPKRSRTAYTRQQVLELEK
Sbjct: 116 ACSQPAPDHP-SSAASKQP-IVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEK 173
Query: 172 EFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKGRSS-------S 224
EFH+NRYLTRRRRIEIAH+LCLSERQIKIWFQNRRMKWKKDH+LPNTK RS+ S
Sbjct: 174 EFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPS 233
Query: 225 SSSSSSCSSSVAPSQHLQPMAKDHHTDLTTL 255
+ S+++ +S SQ P + D+T L
Sbjct: 234 TLSAATPGTSEDHSQSATPPEQQRAEDITRL 264
>gi|24497540 homeobox C4 [Homo sapiens]
Length = 264
Score = 261 bits (667), Expect = 4e-70
Identities = 147/271 (54%), Positives = 179/271 (66%), Gaps = 23/271 (8%)
Query: 1 MVMSSYMVNSKYVDPKFPPCEEYLQGGYLGEQGADYYGGGAQ-GADFQPPGLYP----RP 55
M+MSSY+++S Y+DPKFPPCEEY Q Y+ E +YYG + G LYP RP
Sbjct: 1 MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPPPRP 60
Query: 56 DFGEQPFGGSG-PGPGSALPARGHGQEPGGPGGHYAAPGEPC--PAPPAPPPA-PLPGAR 111
+ E+ + + GPG++ RGHG P G H+ + PAP + A P P
Sbjct: 61 SYPERQYSCTSLQGPGNS---RGHG--PAQAGHHHPEKSQSLCEPAPLSGASASPSPAPP 115
Query: 112 AYSQSDPKQPPSGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELEK 171
A SQ P P S A KQP +VYPWMKK+HV++VNPNY GGEPKRSRTAYTRQQVLELEK
Sbjct: 116 ACSQPAPDHP-SSAASKQP-IVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEK 173
Query: 172 EFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKGRSS-------S 224
EFH+NRYLTRRRRIEIAH+LCLSERQIKIWFQNRRMKWKKDH+LPNTK RS+ S
Sbjct: 174 EFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPS 233
Query: 225 SSSSSSCSSSVAPSQHLQPMAKDHHTDLTTL 255
+ S+++ +S SQ P + D+T L
Sbjct: 234 TLSAATPGTSEDHSQSATPPEQQRAEDITRL 264
>gi|13273315 homeobox B4 [Homo sapiens]
Length = 251
Score = 251 bits (642), Expect = 3e-67
Identities = 140/250 (56%), Positives = 158/250 (63%), Gaps = 34/250 (13%)
Query: 1 MVMSSYMVNSKYVDPKFPPCEEYLQGGYL-GEQGADYYGGGAQGADFQPPGLYPRPDFGE 59
M MSS+++NS YVDPKFPPCEEY Q YL + YY GG R +
Sbjct: 1 MAMSSFLINSNYVDPKFPPCEEYSQSDYLPSDHSPGYYAGGQ------------RRESSF 48
Query: 60 QPFGGSGPGPGSALPARGHGQEPGGPGGHYAAPGEP-----CPAPPAPPPA----PLPGA 110
QP G G + ++PG P P P P PAPPPA P PG
Sbjct: 49 QPEAGFGRRAACTVQRYAACRDPGPPPPPPPPPPPPPPPGLSPRAPAPPPAGALLPEPGQ 108
Query: 111 R--AYSQSDPKQP---------PSGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRT 159
R A S S P P PS +A K+P VVYPWM+KVHV++VNPNY GGEPKRSRT
Sbjct: 109 RCEAVSSSPPPPPCAQNPLHPSPSHSACKEP-VVYPWMRKVHVSTVNPNYAGGEPKRSRT 167
Query: 160 AYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTK 219
AYTRQQVLELEKEFH+NRYLTRRRR+EIAH LCLSERQIKIWFQNRRMKWKKDHKLPNTK
Sbjct: 168 AYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPNTK 227
Query: 220 GRSSSSSSSS 229
RS ++ S+
Sbjct: 228 IRSGGAAGSA 237
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 235 bits (599), Expect = 3e-62
Identities = 147/312 (47%), Positives = 171/312 (54%), Gaps = 75/312 (24%)
Query: 1 MVMSSYMVNSKYVDPKFPPCEEYLQGGYLGEQGADYYGGGAQGADFQPPGLYPRPDFGEQ 60
M MSS+++NS Y++PKFPP EEY Q + G GAD GG G +Q P P Q
Sbjct: 1 MTMSSFLINSNYIEPKFPPFEEYAQ--HSGSGGAD--GGPGGGPGYQQPPAPPTQHLPLQ 56
Query: 61 ----PFGGSGPGPGSALPARGHGQEPGGPGGHY------------------AAPGEPCPA 98
P G G P ++ A +EP P A+PG P P
Sbjct: 57 QPQLPHAGGGREPTASYYAPRTAREPAYPAAALYPAHGAADTAYPYGYRGGASPGRP-PQ 115
Query: 99 PPAPP--------------------PAPL------PGARAYSQSDPKQP----------- 121
P PP P PL P A ++ P P
Sbjct: 116 PEQPPAQAKGPAHGLHASHVLQPQLPPPLQPRAVPPAAPRRCEAAPATPGVPAGGSAPAC 175
Query: 122 --------PSGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELEKEF 173
P G K+P VVYPWMKK+HV++VNP+Y GGEPKRSRTAYTRQQVLELEKEF
Sbjct: 176 PLLLADKSPLGLKGKEP-VVYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEF 234
Query: 174 HFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKGRSSSSSSSSSCSS 233
HFNRYLTRRRRIEIAHTLCLSERQ+KIWFQNRRMKWKKDHKLPNTK RSS+S+S+S+
Sbjct: 235 HFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASASAGPP 294
Query: 234 SVAPSQ--HLQP 243
A +Q HL P
Sbjct: 295 GKAQTQSPHLHP 306
>gi|24497517 homeobox A5 [Homo sapiens]
Length = 270
Score = 150 bits (380), Expect = 8e-37
Identities = 91/208 (43%), Positives = 110/208 (52%), Gaps = 28/208 (13%)
Query: 29 LGEQGADYYGGGAQGADF--------------QPPGLYPRPDFGEQPFGGSGPGPGSALP 74
+G G+ ++G G + + QP P P P PGS
Sbjct: 56 VGRSGSGHFGSGERARSYAASASAAPAEPRYSQPATSTHSPQPDPLPCSAVAPSPGSDSH 115
Query: 75 ARGHGQEPGGPGG-------HYAAPGEPCPAPPAPPPAPLPGARAYSQSDPKQPPSGTAL 127
G G H ++ A A AP +A +QS+P P
Sbjct: 116 HGGKNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPA--- 172
Query: 128 KQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEI 187
QP + YPWM+K+H++ + N G E KR+RTAYTR Q LELEKEFHFNRYLTRRRRIEI
Sbjct: 173 -QPQI-YPWMRKLHIS--HDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEI 228
Query: 188 AHTLCLSERQIKIWFQNRRMKWKKDHKL 215
AH LCLSERQIKIWFQNRRMKWKKD+KL
Sbjct: 229 AHALCLSERQIKIWFQNRRMKWKKDNKL 256
>gi|11321638 homeobox C5 [Homo sapiens]
Length = 222
Score = 142 bits (357), Expect = 4e-34
Identities = 100/227 (44%), Positives = 113/227 (49%), Gaps = 25/227 (11%)
Query: 3 MSSYMVNSKYVD-PKFPPCEEYLQGGYLGE---QGADY-YGGGAQGADFQPPG---LYPR 54
MSSY+ NS Y P P G Y Q + Y YGG F PP
Sbjct: 1 MSSYVANSFYKQSPNIPAYNMQTCGNYGSASEVQASRYCYGGLDLSITFPPPAPSNSLHG 60
Query: 55 PDFGEQPFGGSGPGPGSALPARGHGQEPGGPGGHYAAPGEP------CPAPPAPPPAPLP 108
D P SA A GH PG AAP P P A
Sbjct: 61 VDMAANPRAHPDRPACSAAAAPGHA-----PGRDEAAPLNPGMYSQKAARPALEERAKSS 115
Query: 109 GARAYSQSDPKQPPSGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLE 168
G Q+ QP + P +YPWM K+H++ + T G KRSRT+YTR Q LE
Sbjct: 116 GEIKEEQAQTGQPAGLSQPPAPPQIYPWMTKLHMS----HETDG--KRSRTSYTRYQTLE 169
Query: 169 LEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKL 215
LEKEFHFNRYLTRRRRIEIA+ LCL+ERQIKIWFQNRRMKWKKD K+
Sbjct: 170 LEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSKM 216
>gi|4504469 homeobox B5 [Homo sapiens]
Length = 269
Score = 140 bits (352), Expect = 1e-33
Identities = 68/115 (59%), Positives = 85/115 (73%), Gaps = 3/115 (2%)
Query: 112 AYSQSDPKQPPSGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELEK 171
A +Q +P + Q ++PWM+K+H++ + TG + KR+RTAYTR Q LELEK
Sbjct: 155 ARAQPEPMATSTAAPEGQTPQIFPWMRKLHISH---DMTGPDGKRARTAYTRYQTLELEK 211
Query: 172 EFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKGRSSSSS 226
EFHFNRYLTRRRRIEIAH LCLSERQIKIWFQNRRMKWKKD+KL + ++ S+
Sbjct: 212 EFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSLATAGSA 266
>gi|23503237 homeobox B6 [Homo sapiens]
Length = 224
Score = 135 bits (340), Expect = 3e-32
Identities = 99/231 (42%), Positives = 111/231 (48%), Gaps = 42/231 (18%)
Query: 3 MSSYMVNSKYVDPKFPPCEEYLQGGYLGEQGADYYGGGAQGADFQPPGLYPRPDFGEQPF 62
MSSY VNS FP Q +LG+ Y G A P YP P
Sbjct: 1 MSSYFVNST-----FPVTLASGQESFLGQLPL-YSSGYAD-----PLRHYPAP------- 42
Query: 63 GGSGPGPGSALPARGHGQEPGGPGGHYAAPGEPCPAPPAPP-------PAPLPGARAYSQ 115
GPGPG P GG+ A PC PAP L GA
Sbjct: 43 --YGPGPGQDKGFATSSYYPPAGGGYGRAA--PCDYGPAPAFYREKESACALSGADEQPP 98
Query: 116 SDPKQPPSGTAL-----------KQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQ 164
P+ S A K VYPWM+++ NS N + G +R R YTR
Sbjct: 99 FHPEPRKSDCAQDKSVFGETEEQKCSTPVYPWMQRM--NSCNSSSFGPSGRRGRQTYTRY 156
Query: 165 QVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKL 215
Q LELEKEFH+NRYLTRRRRIEIAH LCL+ERQIKIWFQNRRMKWKK+ KL
Sbjct: 157 QTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKL 207
>gi|85068580 homeobox B7 [Homo sapiens]
Length = 217
Score = 133 bits (335), Expect = 1e-31
Identities = 89/196 (45%), Positives = 107/196 (54%), Gaps = 33/196 (16%)
Query: 37 YGGGAQGADFQPP--GLYPRPDFGEQPFGGSGPGPGSA--LPARGHGQEPGGPGGHYAAP 92
YG G+ GA F GLYP GG G SA + A G+G EP H AP
Sbjct: 43 YGAGS-GASFAASMQGLYP---------GGGGMAGQSAAGVYAAGYGLEPSSFNMH-CAP 91
Query: 93 GEPCPAPPAPPPAPLPGARAYSQSDPKQPPSGTALKQPAVVYPWMKKVHVNSVNPNYTGG 152
E + PG A + +Q S A + +YPWM+ +G
Sbjct: 92 FEQNLS------GVCPGDSAKAAGAKEQRDSDLAAESNFRIYPWMRS----------SGT 135
Query: 153 EPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKD 212
+ KR R YTR Q LELEKEFH+NRYLTRRRRIEIAHTLCL+ERQIKIWFQNRRMKWKK+
Sbjct: 136 DRKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKE 195
Query: 213 HKL--PNTKGRSSSSS 226
+K P T G+ + +
Sbjct: 196 NKTAGPGTTGQDRAEA 211
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 127 bits (319), Expect = 9e-30
Identities = 84/206 (40%), Positives = 104/206 (50%), Gaps = 40/206 (19%)
Query: 55 PDFGEQPFGGSGPGPGSALPARGHGQEPGGPGGHYAAPGEPCPAPPAPPPAPLPGARAYS 114
P GE P P P A P +P AP P P P APPP P + +
Sbjct: 83 PSLGEPPLH---PPPPQAAPPAPQPPQP--------APQPPAPTPAAPPP---PSSASPP 128
Query: 115 QSDPKQPPSGTALKQPAV--------VYPWMKKVHVNSVNP--NYTGGEP---------- 154
Q+ P A K P + ++PWMK+ N+ + + GE
Sbjct: 129 QNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQ 188
Query: 155 ---KRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKK 211
KR+RTAYT Q++ELEKEFHFNRYL R RR+E+A+ L L+ERQIKIWFQNRRMK+KK
Sbjct: 189 ASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 248
Query: 212 DHKLPNTKGRSSSSSSSSSCSSSVAP 237
D K KG +SS S S V P
Sbjct: 249 DQK---GKGMLTSSGGQSPSRSPVPP 271
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 127 bits (319), Expect = 9e-30
Identities = 84/206 (40%), Positives = 104/206 (50%), Gaps = 40/206 (19%)
Query: 55 PDFGEQPFGGSGPGPGSALPARGHGQEPGGPGGHYAAPGEPCPAPPAPPPAPLPGARAYS 114
P GE P P P A P +P AP P P P APPP P + +
Sbjct: 83 PSLGEPPLH---PPPPQAAPPAPQPPQP--------APQPPAPTPAAPPP---PSSASPP 128
Query: 115 QSDPKQPPSGTALKQPAV--------VYPWMKKVHVNSVNP--NYTGGEP---------- 154
Q+ P A K P + ++PWMK+ N+ + + GE
Sbjct: 129 QNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQ 188
Query: 155 ---KRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKK 211
KR+RTAYT Q++ELEKEFHFNRYL R RR+E+A+ L L+ERQIKIWFQNRRMK+KK
Sbjct: 189 ASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 248
Query: 212 DHKLPNTKGRSSSSSSSSSCSSSVAP 237
D K KG +SS S S V P
Sbjct: 249 DQK---GKGMLTSSGGQSPSRSPVPP 271
>gi|13489077 homeobox A6 [Homo sapiens]
Length = 233
Score = 127 bits (318), Expect = 1e-29
Identities = 96/247 (38%), Positives = 114/247 (46%), Gaps = 35/247 (14%)
Query: 3 MSSYMVNSKYVDPKFPPCEEYLQGGYLGEQGADYYGGGA-------QGADFQPPGLYPRP 55
MSSY VN P FP Q +LG+ G A GA P Y P
Sbjct: 1 MSSYFVN-----PTFPGSLPSGQDSFLGQLPLYQAGYDALRPFPASYGASSLPDKTYTSP 55
Query: 56 DFGEQP------------FGGSGPGPGSALPARGHGQEPGGPGGHYAAPGEPCPAPPAPP 103
F +Q +G S L G P G G PG+ P
Sbjct: 56 CFYQQSNSVLACNRASYEYGASCFYSDKDLS----GASPSG-SGKQRGPGDYLHFSPEQQ 110
Query: 104 PAPLPGARAYSQSDPKQPPSGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTR 163
P + S G K + VYPWM+++ NS G +R R YTR
Sbjct: 111 YKP----DSSSGQGKALHDEGADRKYTSPVYPWMQRM--NSCAGAVYGSHGRRGRQTYTR 164
Query: 164 QQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKGRSS 223
Q LELEKEFHFNRYLTRRRRIEIA+ LCL+ERQIKIWFQNRRMKWKK++KL N+ S
Sbjct: 165 YQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSG 224
Query: 224 SSSSSSS 230
S + +
Sbjct: 225 EDSEAKA 231
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 125 bits (314), Expect = 4e-29
Identities = 100/272 (36%), Positives = 118/272 (43%), Gaps = 61/272 (22%)
Query: 24 LQGGYLGEQGADYYGGGAQGADFQPPGLYPRPDFGEQPFGGSGPGPGSALPAR------- 76
L GGY + D YG + PP D + GS S+ P R
Sbjct: 28 LFGGYGYSKTTDTYGYSTPHQPYPPPAAASSLD---TDYPGSACSIQSSAPLRAPAHKGA 84
Query: 77 ---------GHGQEPGGPGGHYAAPG---EPCPAPPAPPPAPLPGARAYSQSDPKQPPSG 124
G G GG GG PG E P P PPP LP S P P G
Sbjct: 85 ELNGSCMRPGTGNSQGGGGGSQP-PGLNSEQQPPQPPPPPPTLP------PSSPTNPGGG 137
Query: 125 TALKQPA--------------VVYPWMKKVHVNSVNPNY--TGGEP-----------KRS 157
K+P ++PWMK+ NS N T GE KR
Sbjct: 138 VPAKKPKGGPNASSSSATISKQIFPWMKESRQNSKQKNSCATAGESCEDKSPPGPASKRV 197
Query: 158 RTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPN 217
RTAYT Q++ELEKEFHFNRYL R RR+E+A+ L L+ERQIKIWFQNRRMK+KKD K
Sbjct: 198 RTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAKG 257
Query: 218 TKGRSSSSSSSSS-----CSSSVAPSQHLQPM 244
+S S S + VA S L P+
Sbjct: 258 ILHSPASQSPERSPPLGGAAGHVAYSGQLPPV 289
>gi|24497556 homeobox A7 [Homo sapiens]
Length = 230
Score = 122 bits (306), Expect = 3e-28
Identities = 60/104 (57%), Positives = 74/104 (71%), Gaps = 13/104 (12%)
Query: 133 VYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLC 192
+YPWM+ +G + KR R YTR Q LELEKEFHFNRYLTRRRRIEIAH LC
Sbjct: 119 IYPWMRS----------SGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALC 168
Query: 193 LSERQIKIWFQNRRMKWKKDHKLPNTKGRSSSSSSSSSCSSSVA 236
L+ERQIKIWFQNRRMKWKK+HK +G +++++ + S+ A
Sbjct: 169 LTERQIKIWFQNRRMKWKKEHK---DEGPTAAAAPEGAVPSAAA 209
>gi|15029506 homeobox D8 [Homo sapiens]
Length = 290
Score = 122 bits (305), Expect = 4e-28
Identities = 90/240 (37%), Positives = 113/240 (47%), Gaps = 44/240 (18%)
Query: 8 VNSKYVDPKFPPCEEYLQGGYLGEQGA-DYYGGGAQGADFQPPGLYPRPDFGEQPFGGSG 66
+N Y D F P + G + A YG A G PP + P P SG
Sbjct: 27 INPTYYDCHFAP---EVGGRHAAAAAALQLYGNSAAGFPHAPPQAHAHPHPSPPP---SG 80
Query: 67 PGPGSALPARGHGQEPGGPGG------HYAAPGEPCPAPPAPPPAPLPG-------ARAY 113
G G G GQE PGG + AAP P PP PPP P G A+ Y
Sbjct: 81 TGCGGR---EGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPPPPPCGGIACHGEPAKFY 137
Query: 114 SQSDPKQPPSGTALKQPAVV-YPWMKKV---------HVNS----------VNPNYTGGE 153
+ ++ P T ++ +V YP K H+N + P G
Sbjct: 138 GYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGEDPDHLNQSSSPSQMFPWMRPQAAPGR 197
Query: 154 PKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDH 213
+R R Y+R Q LELEKEF FN YLTR+RRIE++H L L+ERQ+KIWFQNRRMKWKK++
Sbjct: 198 -RRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQVKIWFQNRRMKWKKEN 256
>gi|24497544 homeobox C6 isoform 2 [Homo sapiens]
Length = 153
Score = 118 bits (296), Expect = 4e-27
Identities = 57/98 (58%), Positives = 73/98 (74%), Gaps = 2/98 (2%)
Query: 133 VYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLC 192
+YPWM++++ +S Y G + +R R Y+R Q LELEKEFHFNRYLTRRRRIEIA+ LC
Sbjct: 40 IYPWMQRMNSHS-GVGY-GADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALC 97
Query: 193 LSERQIKIWFQNRRMKWKKDHKLPNTKGRSSSSSSSSS 230
L+ERQIKIWFQNRRMKWKK+ L +T +++ S
Sbjct: 98 LTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADS 135
>gi|4758554 homeobox C6 isoform 1 [Homo sapiens]
Length = 235
Score = 118 bits (296), Expect = 4e-27
Identities = 57/98 (58%), Positives = 73/98 (74%), Gaps = 2/98 (2%)
Query: 133 VYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLC 192
+YPWM++++ +S Y G + +R R Y+R Q LELEKEFHFNRYLTRRRRIEIA+ LC
Sbjct: 122 IYPWMQRMNSHS-GVGY-GADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALC 179
Query: 193 LSERQIKIWFQNRRMKWKKDHKLPNTKGRSSSSSSSSS 230
L+ERQIKIWFQNRRMKWKK+ L +T +++ S
Sbjct: 180 LTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADS 217
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 116 bits (290), Expect = 2e-26
Identities = 97/271 (35%), Positives = 118/271 (43%), Gaps = 69/271 (25%)
Query: 24 LQGGYLGEQGADYYGGGAQGADFQPP--------GLYPRPDFGEQPFGGSGPGPGSALPA 75
L GGY G++ +G QPP G Y R Q G + P S
Sbjct: 14 LFGGYSSYPGSNGFGFDVPP---QPPFQAATHLEGDYQRSACSLQSLGNAAPHAKSK-EL 69
Query: 76 RGHGQEPGGPGGHYAAPGEPCPAPP-APPPAPLPGARAY--------SQSDPKQPPSGTA 126
G PG AP EP APP +PPP+ P + S+S P + GT
Sbjct: 70 NGSCMRPG------LAP-EPLSAPPGSPPPSAAPTSATSNSSNGGGPSKSGPPKCGPGTN 122
Query: 127 LKQPAVVYPWMKKVHVNSVNPNYTGGEP-------------------------------- 154
++PWMK+ S N + G
Sbjct: 123 STLTKQIFPWMKESRQTSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDKSP 182
Query: 155 ------KRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMK 208
KR+RTAYT Q++ELEKEFHFNRYL R RR+E+A+ L LSERQIKIWFQNRRMK
Sbjct: 183 PGSAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMK 242
Query: 209 WKKDHKLPNTKGRSSSSSSSSSCSSSVAPSQ 239
+KKD K KG +SSS S S P Q
Sbjct: 243 YKKDQK---AKGLASSSGGPSPAGSPPQPMQ 270
>gi|4504465 homeobox B2 [Homo sapiens]
Length = 356
Score = 111 bits (278), Expect = 5e-25
Identities = 77/207 (37%), Positives = 100/207 (48%), Gaps = 20/207 (9%)
Query: 42 QGADFQPPGLYPRPDFGEQPFGGSGPGPGSALPARGHGQEPGGPGGHYAAPGEPCPAPPA 101
Q + + L P P EQ F PG + R + GP A P P P PA
Sbjct: 33 QTSSIKESTLIPPPPPFEQTFPSLQPGASTLQRPRSQKRAEDGP----ALPPPPPPPLPA 88
Query: 102 PPPAP-------LPGARAYSQSDPKQPPSGTALKQPAVVYPWMKKVHVNSVN-PNYTGGE 153
PPAP A+ SQS P+ +A+ V P + + P GG
Sbjct: 89 APPAPEFPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSP------ADGLGLPEAGGGG 142
Query: 154 PKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKK-- 211
+R RTAYT Q+LELEKEFHFN+YL R RR+EIA L L+ERQ+K+WFQNRRMK K+
Sbjct: 143 ARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQT 202
Query: 212 DHKLPNTKGRSSSSSSSSSCSSSVAPS 238
H+ P + + C + P+
Sbjct: 203 QHREPPDGEPACPGALEDICDPAEEPA 229
>gi|24497526 homeobox B1 [Homo sapiens]
Length = 301
Score = 110 bits (274), Expect = 2e-24
Identities = 97/284 (34%), Positives = 122/284 (42%), Gaps = 60/284 (21%)
Query: 4 SSYMVNSKYVDPKFPPCEEYLQGGYLGEQGADYYGGGAQGADFQPPGLYPR---PDFGEQ 60
S+Y +S FPP Y E YGGG FQ YP P
Sbjct: 20 SAYSAHS--APTSFPPSSAQAVDSYASE---GRYGGGLSSPAFQQNSGYPAQQPPSTLGV 74
Query: 61 PFGGSGPG---PGSALPARG---------------------HGQEPGGPGGHYAAPGE-P 95
PF S P P + P+ G +G + GG Y A G P
Sbjct: 75 PFPSSAPSGYAPAACSPSYGPSQYYPLGQSEGDGGYFHPSSYGAQLGGLSDGYGAGGAGP 134
Query: 96 CPAPPAPPP------APLPGARAYSQSDPKQPPSGTALKQP-AVVYPWMKKVHVNSVNPN 148
P PP PP A A A S+ K+ P + P A + WMK NP
Sbjct: 135 GPYPPQHPPYGNEQTASFAPAYADLLSEDKETPCPSEPNTPTARTFDWMKVKR----NPP 190
Query: 149 YTG-------GEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIW 201
T G P RT +T +Q+ ELEKEFHFN+YL+R RR+EIA TL L+E Q+KIW
Sbjct: 191 KTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIW 250
Query: 202 FQNRRMKWKK----DHKLPNT-----KGRSSSSSSSSSCSSSVA 236
FQNRRMK KK + ++P K + +S S+C+S A
Sbjct: 251 FQNRRMKQKKREREEGRVPPAPPGCPKEAAGDASDQSTCTSPEA 294
>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
Length = 283
Score = 108 bits (271), Expect = 3e-24
Identities = 71/182 (39%), Positives = 89/182 (48%), Gaps = 53/182 (29%)
Query: 84 GPGGHYAAPGEPC----PAPPAPPPAPLPGAR-AYSQSDPKQ------------------ 120
GP ++A C PP PPP P PGA A Q P
Sbjct: 23 GPAPEFSASPPACLYMGRQPPPPPPHPFPGALGALEQGSPPDISPYEVPPLADDPAVAHL 82
Query: 121 ------------PPSGT--------ALKQPAVV---YPWMKKVHVNSVNPNYTGG----- 152
PP+G L++P V +PWMK ++ + GG
Sbjct: 83 HHHLPAQLALPHPPAGPFPEGAEPGVLEEPNRVQLPFPWMKSTKAHAWKGQWAGGAYAAE 142
Query: 153 --EPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWK 210
E KR+RTAYTR Q+LELEKEF FN+Y++R RR+E+A L L+ER IKIWFQNRRMKWK
Sbjct: 143 PEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWK 202
Query: 211 KD 212
K+
Sbjct: 203 KE 204
Score = 32.0 bits (71), Expect = 0.54
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 12/70 (17%)
Query: 76 RGHGQEPGGPGGHYAAPGEPCPA----------PPAPPPAPLPGARAYSQSDPKQPPSGT 125
RG G GG G A P + C PP PP +P A + + + PP +
Sbjct: 209 RGGGTAVGGGG--VAEPEQDCAVTSGEELLALPPPPPPGGAVPPAAPVAAREGRLPPGLS 266
Query: 126 ALKQPAVVYP 135
A QP+ V P
Sbjct: 267 ASPQPSSVAP 276
>gi|24497515 homeobox A3 isoform b [Homo sapiens]
Length = 285
Score = 102 bits (253), Expect = 4e-22
Identities = 53/83 (63%), Positives = 62/83 (74%), Gaps = 3/83 (3%)
Query: 155 KRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHK 214
KR+RTAYT Q++ELEKEFHFNRYL R RR+E+A+ L L+ERQIKIWFQNRRMK+KKD K
Sbjct: 34 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 93
Query: 215 LPNTKGRSSSSSSSSSCSSSVAP 237
KG +SS S S V P
Sbjct: 94 ---GKGMLTSSGGQSPSRSPVPP 113
>gi|13273317 homeobox B8 [Homo sapiens]
Length = 243
Score = 100 bits (250), Expect = 9e-22
Identities = 76/225 (33%), Positives = 103/225 (45%), Gaps = 19/225 (8%)
Query: 3 MSSYMVNSKYVDPKFPPC--EEYLQGGYLGEQGA--DYYGGGAQGADFQPPGLYPRPDFG 58
MSSY VNS + K Y G+ + G G + G FQ P G
Sbjct: 1 MSSYFVNSLFSKYKTGESLRPNYYDCGFAQDLGGRPTVVYGPSSGGSFQHPSQIQEFYHG 60
Query: 59 EQPFGGSGPGPGSALPARGHGQEPGGPGGHYAAPGEPCPAPPAPPPAPLPGARAYSQSDP 118
+ P + HG +PG G+ + P + + S
Sbjct: 61 PSSLS-TAPYQQNPCAVACHG-DPGNFYGYDPLQRQSLFGAQDPDLVQYADCKLAAASGL 118
Query: 119 KQPPSGTALK-QPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELEKEFHFNR 177
+ G+ P ++PWM+ P G +R R Y+R Q LELEKEF FN
Sbjct: 119 GEEAEGSEQSPSPTQLFPWMR--------PQAAAGR-RRGRQTYSRYQTLELEKEFLFNP 169
Query: 178 YLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDH---KLPNTK 219
YLTR+RRIE++H L L+ERQ+KIWFQNRRMKWKK++ K P++K
Sbjct: 170 YLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSK 214
>gi|121114296 caudal type homeobox 1 [Homo sapiens]
Length = 265
Score = 100 bits (249), Expect = 1e-21
Identities = 76/195 (38%), Positives = 90/195 (46%), Gaps = 24/195 (12%)
Query: 38 GGGAQGADFQPPGLYPRPDFGEQPFGGSGPGP----GSALPA------RGHGQEPGGPGG 87
G A G PP PDF P P G+ PA +G P P
Sbjct: 26 GPQAYGPPAPPPAPPQYPDFSSYSHVEPAPAPPTAWGAPFPAPKDDWAAAYGPGPAAPAA 85
Query: 88 HYA--APGEPCPAPPAP-PPAPLPGARAYSQSDPKQPPSGTALKQPAVVYPWMKKVHVNS 144
A A G P P P PP P PG A P P S A Q Y WM++ S
Sbjct: 86 SPASLAFGPPPDFSPVPAPPGPGPGLLAQPLGGPGTPSSPGA--QRPTPYEWMRR----S 139
Query: 145 VNPNYTGGEPK-----RSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIK 199
V GG K + R YT Q LELEKEFH++RY+T RR+ E+A L L+ERQ+K
Sbjct: 140 VAAGGGGGSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVK 199
Query: 200 IWFQNRRMKWKKDHK 214
IWFQNRR K +K +K
Sbjct: 200 IWFQNRRAKERKVNK 214
>gi|10140847 homeobox A2 [Homo sapiens]
Length = 376
Score = 98.6 bits (244), Expect = 5e-21
Identities = 64/160 (40%), Positives = 84/160 (52%), Gaps = 16/160 (10%)
Query: 85 PGGH--YAAPGEPCPAPPAPPPAPLPGARAYSQSDP----KQPPSGTALKQPAVVYPWMK 138
PG H + A G P P+P +P+P P K+ TAL A
Sbjct: 61 PGSHPRHGAGGRPKPSPAGSRGSPVPAGALQPPEYPWMKEKKAAKKTALLPAAAAAATAA 120
Query: 139 KV------HVNSVN-PNYTGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTL 191
H S+ + +GG +R RTAYT Q+LELEKEFHFN+YL R RR+EIA L
Sbjct: 121 ATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALL 180
Query: 192 CLSERQIKIWFQNRRMKWKKDHKL---PNTKGRSSSSSSS 228
L+ERQ+K+WFQNRRMK K+ + N++G+ S S
Sbjct: 181 DLTERQVKVWFQNRRMKHKRQTQCKENQNSEGKCKSLEDS 220
>gi|5031761 homeobox A1 isoform a [Homo sapiens]
Length = 335
Score = 98.6 bits (244), Expect = 5e-21
Identities = 63/144 (43%), Positives = 76/144 (52%), Gaps = 23/144 (15%)
Query: 112 AYSQSDPKQPPSGTALKQPAVVYPWMKKVHVNSVNPNYTG--------GEPKRSRTAYTR 163
A Q + P S T+ PA + WMK NP TG G+P RT +T
Sbjct: 185 ASHQEACRSPASETS--SPAQTFDWMKVKR----NPPKTGKVGEYGYLGQPNAVRTNFTT 238
Query: 164 QQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHK--------- 214
+Q+ ELEKEFHFN+YLTR RR+EIA +L L+E Q+KIWFQNRRMK KK K
Sbjct: 239 KQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKEGLLPISPA 298
Query: 215 LPNTKGRSSSSSSSSSCSSSVAPS 238
P + SS S SS PS
Sbjct: 299 TPPGNDEKAEESSEKSSSSPCVPS 322
>gi|12056969 homeobox C8 [Homo sapiens]
Length = 242
Score = 97.8 bits (242), Expect = 8e-21
Identities = 79/231 (34%), Positives = 112/231 (48%), Gaps = 28/231 (12%)
Query: 3 MSSYMVN---SKY-----VDPKFPPCEEYLQGGYLGEQGADYYGGGAQGADFQPPGLYPR 54
MSSY VN SKY ++P + C + Q +G A YG G FQ + +
Sbjct: 1 MSSYFVNPLFSKYKAGESLEPAYYDCR-FPQS--VGRSHALVYGPGGSAPGFQHASHHVQ 57
Query: 55 PDFGEQPFGGSGPG-PGSALPARGHGQEPGGPGGHYAAPGEPC-PAPPAPPPAPLPGARA 112
F G S G + HG + G+ A P + A P ++
Sbjct: 58 DFFHHGTSGISNSGYQQNPCSLSCHG-DASKFYGYEALPRQSLYGAQQEASVVQYPDCKS 116
Query: 113 YSQSDPKQPPSG-TALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELEK 171
+ ++ + P++++PWM+ P+ G + R Y+R Q LELEK
Sbjct: 117 SANTNSSEGQGHLNQNSSPSLMFPWMR--------PHAPGR--RSGRQTYSRYQTLELEK 166
Query: 172 EFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDH---KLPNTK 219
EF FN YLTR+RRIE++H L L+ERQ+KIWFQNRRMKWKK++ KLP +
Sbjct: 167 EFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKLPGAR 217
>gi|13375632 homeobox D1 [Homo sapiens]
Length = 328
Score = 93.2 bits (230), Expect = 2e-19
Identities = 69/194 (35%), Positives = 84/194 (43%), Gaps = 31/194 (15%)
Query: 49 PGLYPRPDFGEQPFGGSGPGPGSALPA-RGHGQEPGGPGGHYA----------------- 90
PG P G +G G GP P G + GG HYA
Sbjct: 93 PGAAPAAAAGGADYGFLGSGPAYDFPGVLGRAADDGGSHVHYATSAVFSGGGSFLLSGQV 152
Query: 91 ---APGEPCPAPPAPP------PAPLPGARAYSQSDPKQPPSGTALKQPAVVYPWMKKVH 141
A GEP P P P A + PK + L + WMK
Sbjct: 153 DYAAFGEPGPFPACLKASADGHPGAFQTASPAPGTYPKSVSPASGLPAAFSTFEWMKVKR 212
Query: 142 VNSVN---PNYTGGEPKRS-RTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQ 197
S Y P + RT ++ +Q+ ELEKEFHFN+YLTR RRIEIA+ L L++ Q
Sbjct: 213 NASKKGKLAEYGAASPSSAIRTNFSTKQLTELEKEFHFNKYLTRARRIEIANCLHLNDTQ 272
Query: 198 IKIWFQNRRMKWKK 211
+KIWFQNRRMK KK
Sbjct: 273 VKIWFQNRRMKQKK 286
>gi|182765442 homeobox A10 isoform a [Homo sapiens]
Length = 410
Score = 90.9 bits (224), Expect = 1e-18
Identities = 60/158 (37%), Positives = 78/158 (49%), Gaps = 11/158 (6%)
Query: 64 GSGPGPGSALPARGHGQEPGGPGGHYAAPGEPCPAPPAPPPAPLPGARAYSQSDPKQPPS 123
G+GP P P RG P G A + PPP G+ SQ D + S
Sbjct: 237 GAGPFPAQP-PGRGFDLPPALASGSADAARKERALDSPPPPTLACGSGGGSQGDEEAHAS 295
Query: 124 GTALKQPAVVYPWMKKVHV------NSVNPN----YTGGEPKRSRTAYTRQQVLELEKEF 173
+A ++ + K NS N T ++ R YT+ Q LELEKEF
Sbjct: 296 SSAAEELSPAPSESSKASPEKDSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEF 355
Query: 174 HFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKK 211
FN YLTR RR+EI+ ++ L++RQ+KIWFQNRRMK KK
Sbjct: 356 LFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 393
Score = 32.0 bits (71), Expect = 0.54
Identities = 36/119 (30%), Positives = 42/119 (35%), Gaps = 37/119 (31%)
Query: 26 GGYLGEQGADYYGGGAQGADFQPP-----------GLYPR--PDFGEQPFGGSGPGPGSA 72
GG G G YY A G + PP GL+P E GSG G G
Sbjct: 47 GGAGGGGGGGYY---AHGGVYLPPAADLPYGLQSCGLFPTLGGKRNEAASPGSGGGGGGL 103
Query: 73 LP-ARGHG----------------QEPGGPGGHYAAPGEPCPAPPAPPPAPLPGARAYS 114
P A G+G + P GP P + P PP PP P P A + S
Sbjct: 104 GPGAHGYGPSPIDLWLDAPRSCRMEPPDGP----PPPPQQQPPPPPQPPQPAPQATSCS 158
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.133 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,958,214
Number of Sequences: 37866
Number of extensions: 1137385
Number of successful extensions: 20015
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 1164
Number of HSP's that attempted gapping in prelim test: 9413
Number of HSP's gapped (non-prelim): 7663
length of query: 255
length of database: 18,247,518
effective HSP length: 100
effective length of query: 155
effective length of database: 14,460,918
effective search space: 2241442290
effective search space used: 2241442290
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.