Guide to the Human Genome
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Name: MFAP4 Sequence: fasta or formatted (255aa) NCBI GI: 23111005
Description:

microfibrillar-associated protein 4

Referenced in:

Lung
Extracellular Matrix

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         20           2
 C cysteine            2.4          6           1
 D aspartate           6.7         17           2
 E glutamate           3.9         10           2
 F phenylalanine       7.5         19           2
 G glycine             9.8         25           2
 H histidine           1.6          4           1
 I isoleucine          2.4          6           1
 K lysine              4.3         11           1
 L leucine            11.0         28           5
 M methionine          1.6          4           1
 N asparagine          4.3         11           2
 P proline             3.9         10           2
 Q glutamine           4.7         12           2
 R arginine            4.3         11           2
 S serine              7.8         20           2
 T threonine           3.5          9           2
 V valine              4.3         11           1
 W tryptophan          2.4          6           1
 Y tyrosine            5.9         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   microfibrillar-associated protein 4 
FIBCD1                0.457   fibrinogen C domain containing 1 
FIBCD1                0.457   fibrinogen C domain containing 1 
FCN2                  0.387   ficolin 2 isoform b precursor 
FCN2                  0.387   ficolin 2 isoform a precursor 
FCN1                  0.369   ficolin 1 precursor 
FCN3                  0.346   ficolin 3 isoform 1 precursor 
FCN3                  0.340   ficolin 3 isoform 2 precursor 
TNR                   0.330   tenascin R 
ANGPTL1               0.330   angiopoietin-like 1 precursor 
ANGPTL2               0.318   angiopoietin-like 2 precursor 
FGL1                  0.316   fibrinogen-like 1 precursor 
FGL1                  0.316   fibrinogen-like 1 precursor 
FGL1                  0.316   fibrinogen-like 1 precursor 
FGL1                  0.316   fibrinogen-like 1 precursor 
TNC                   0.316   tenascin C precursor 
ANGPTL7               0.312   angiopoietin-like 7 
TNN                   0.305   tenascin N 
ANGPTL6               0.293   angiopoietin-like 6 
ANGPT1                0.291   angiopoietin 1 
TNXB                  0.291   tenascin XB isoform 2 
TNXB                  0.291   tenascin XB isoform 1 precursor 
ANGPT4                0.281   angiopoietin 4 
FGG                   0.275   fibrinogen, gamma chain isoform gamma-B precursor [H...
FGG                   0.275   fibrinogen, gamma chain isoform gamma-A precursor [H...
ANGPT2                0.271   angiopoietin 2 isoform c precursor 
ANGPT2                0.271   angiopoietin 2 isoform b precursor 
ANGPT2                0.271   angiopoietin 2 isoform a precursor 
FGA                   0.264   fibrinogen, alpha polypeptide isoform alpha-E preprop...
FGL2                  0.248   fibrinogen-like 2 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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