Search of human proteins with 228480282

Search of human proteins with 228480282

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|228480282 Sep (O-phosphoserine) tRNA:Sec (selenocysteine)
tRNA synthase isoform 2 [Homo sapiens]
         (422 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|228480282 Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRN...   840   0.0  
gi|228480284 Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRN...   816   0.0  
gi|228480280 Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRN...   816   0.0  
gi|224586823 coiled-coil domain containing 110 isoform b [Homo s...    35   0.13 
gi|22749515 coiled-coil domain containing 110 isoform a [Homo sa...    35   0.13 
gi|157502179 tetratricopeptide repeat domain 21A isoform 1 [Homo...    31   1.9  
gi|157502177 tetratricopeptide repeat domain 21A isoform 2 [Homo...    31   1.9  
gi|132626688 mediator of DNA-damage checkpoint 1 [Homo sapiens]        29   9.2  
gi|206725420 G protein-coupled receptor kinase interacting ArfGA...    29   9.2  
gi|21237786 G protein-coupled receptor kinase interacting ArfGAP...    29   9.2  

>gi|228480282 Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA
           synthase isoform 2 [Homo sapiens]
          Length = 422

 Score =  840 bits (2171), Expect = 0.0
 Identities = 422/422 (100%), Positives = 422/422 (100%)

Query: 1   MSTSYGCFWRRFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLAGVHTVANCFV 60
           MSTSYGCFWRRFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLAGVHTVANCFV
Sbjct: 1   MSTSYGCFWRRFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLAGVHTVANCFV 60

Query: 61  VPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELR 120
           VPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELR
Sbjct: 61  VPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELR 120

Query: 121 TDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQS 180
           TDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQS
Sbjct: 121 TDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQS 180

Query: 181 SKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGRASASPS 240
           SKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGRASASPS
Sbjct: 181 SKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGRASASPS 240

Query: 241 LDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKT 300
           LDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKT
Sbjct: 241 LDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKT 300

Query: 301 LDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASA 360
           LDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASA
Sbjct: 301 LDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASA 360

Query: 361 IGMKMQDVDLFIKRLDRCLKAVRKERSKESDDNYDKTEDVDIEEMALKLDNVLLDTYQDA 420
           IGMKMQDVDLFIKRLDRCLKAVRKERSKESDDNYDKTEDVDIEEMALKLDNVLLDTYQDA
Sbjct: 361 IGMKMQDVDLFIKRLDRCLKAVRKERSKESDDNYDKTEDVDIEEMALKLDNVLLDTYQDA 420

Query: 421 SS 422
           SS
Sbjct: 421 SS 422


>gi|228480284 Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA
           synthase isoform 3 [Homo sapiens]
          Length = 500

 Score =  816 bits (2109), Expect = 0.0
 Identities = 412/412 (100%), Positives = 412/412 (100%)

Query: 11  RFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLAGVHTVANCFVVPMATGMSLT 70
           RFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLAGVHTVANCFVVPMATGMSLT
Sbjct: 89  RFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLAGVHTVANCFVVPMATGMSLT 148

Query: 71  LCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKV 130
           LCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKV
Sbjct: 149 LCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKV 208

Query: 131 QELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQG 190
           QELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQG
Sbjct: 209 QELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQG 268

Query: 191 ARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSL 250
           ARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSL
Sbjct: 269 ARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSL 328

Query: 251 GSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVT 310
           GSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVT
Sbjct: 329 GSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVT 388

Query: 311 QLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDL 370
           QLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDL
Sbjct: 389 QLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDL 448

Query: 371 FIKRLDRCLKAVRKERSKESDDNYDKTEDVDIEEMALKLDNVLLDTYQDASS 422
           FIKRLDRCLKAVRKERSKESDDNYDKTEDVDIEEMALKLDNVLLDTYQDASS
Sbjct: 449 FIKRLDRCLKAVRKERSKESDDNYDKTEDVDIEEMALKLDNVLLDTYQDASS 500


>gi|228480280 Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA
           synthase isoform 1 [Homo sapiens]
          Length = 501

 Score =  816 bits (2109), Expect = 0.0
 Identities = 412/412 (100%), Positives = 412/412 (100%)

Query: 11  RFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLAGVHTVANCFVVPMATGMSLT 70
           RFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLAGVHTVANCFVVPMATGMSLT
Sbjct: 90  RFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLAGVHTVANCFVVPMATGMSLT 149

Query: 71  LCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKV 130
           LCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKV
Sbjct: 150 LCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKV 209

Query: 131 QELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQG 190
           QELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQG
Sbjct: 210 QELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQG 269

Query: 191 ARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSL 250
           ARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSL
Sbjct: 270 ARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSL 329

Query: 251 GSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVT 310
           GSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVT
Sbjct: 330 GSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVT 389

Query: 311 QLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDL 370
           QLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDL
Sbjct: 390 QLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDL 449

Query: 371 FIKRLDRCLKAVRKERSKESDDNYDKTEDVDIEEMALKLDNVLLDTYQDASS 422
           FIKRLDRCLKAVRKERSKESDDNYDKTEDVDIEEMALKLDNVLLDTYQDASS
Sbjct: 450 FIKRLDRCLKAVRKERSKESDDNYDKTEDVDIEEMALKLDNVLLDTYQDASS 501


>gi|224586823 coiled-coil domain containing 110 isoform b [Homo
           sapiens]
          Length = 796

 Score = 35.0 bits (79), Expect = 0.13
 Identities = 32/162 (19%), Positives = 68/162 (41%), Gaps = 7/162 (4%)

Query: 257 KLLKERKEMFSYLS-NQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSM 315
           +LLKE+  + + L  +Q++ +     ERL  T     +L   ++T+ + +    T L   
Sbjct: 557 QLLKEKSSLGNELKESQLEIIQLKEKERLAKTEQE--TLLQIIETVKDEKLNLETTLQES 614

Query: 316 LFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRL 375
              RQ+    +  + + Q+ +   F   + +  +    Y N+ S IG + + +   +   
Sbjct: 615 TAARQIMEREIENIQTYQSTAEENFLQEIKNAKSEASIYKNSLSEIGKECEMLSKMVMET 674

Query: 376 DRCLKAVRKERSKESDDNYDKTEDVDIEEMALKLDNVLLDTY 417
               + +++E  K S +N      +      L  D +LL+ Y
Sbjct: 675 KTDNQILKEELKKHSQENIKFENSIS----RLTEDKILLENY 712


>gi|22749515 coiled-coil domain containing 110 isoform a [Homo
           sapiens]
          Length = 833

 Score = 35.0 bits (79), Expect = 0.13
 Identities = 32/162 (19%), Positives = 68/162 (41%), Gaps = 7/162 (4%)

Query: 257 KLLKERKEMFSYLS-NQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSM 315
           +LLKE+  + + L  +Q++ +     ERL  T     +L   ++T+ + +    T L   
Sbjct: 594 QLLKEKSSLGNELKESQLEIIQLKEKERLAKTEQE--TLLQIIETVKDEKLNLETTLQES 651

Query: 316 LFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRL 375
              RQ+    +  + + Q+ +   F   + +  +    Y N+ S IG + + +   +   
Sbjct: 652 TAARQIMEREIENIQTYQSTAEENFLQEIKNAKSEASIYKNSLSEIGKECEMLSKMVMET 711

Query: 376 DRCLKAVRKERSKESDDNYDKTEDVDIEEMALKLDNVLLDTY 417
               + +++E  K S +N      +      L  D +LL+ Y
Sbjct: 712 KTDNQILKEELKKHSQENIKFENSIS----RLTEDKILLENY 749


>gi|157502179 tetratricopeptide repeat domain 21A isoform 1 [Homo
           sapiens]
          Length = 1321

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 36/162 (22%), Positives = 70/162 (43%), Gaps = 15/162 (9%)

Query: 167 DIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQE 226
           DIP ++N+       KC+ L+ +  +  + +A +++L+K   + +   I+         E
Sbjct: 830 DIPSMMNDV------KCLLLLAKVYKSHKKEAVIETLNK--ALDLQSRILKRVP----LE 877

Query: 227 ISKMYPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLL- 285
             +M P +   + S+ +      L    Y K ++  K++FSYL    K + E     LL 
Sbjct: 878 QPEMIPSQKQLAASICIQFAEHYLAEKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQ 937

Query: 286 -HTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARV 326
            H        A+ L+T   H   +V  +  ++F +Q   A +
Sbjct: 938 GHLDLCEQHCAILLQTEQNHETASVL-MADLMFRKQKHEAAI 978


>gi|157502177 tetratricopeptide repeat domain 21A isoform 2 [Homo
           sapiens]
          Length = 1320

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 36/162 (22%), Positives = 70/162 (43%), Gaps = 15/162 (9%)

Query: 167 DIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQE 226
           DIP ++N+       KC+ L+ +  +  + +A +++L+K   + +   I+         E
Sbjct: 829 DIPSMMNDV------KCLLLLAKVYKSHKKEAVIETLNK--ALDLQSRILKRVP----LE 876

Query: 227 ISKMYPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLL- 285
             +M P +   + S+ +      L    Y K ++  K++FSYL    K + E     LL 
Sbjct: 877 QPEMIPSQKQLAASICIQFAEHYLAEKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQ 936

Query: 286 -HTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARV 326
            H        A+ L+T   H   +V  +  ++F +Q   A +
Sbjct: 937 GHLDLCEQHCAILLQTEQNHETASVL-MADLMFRKQKHEAAI 977


>gi|132626688 mediator of DNA-damage checkpoint 1 [Homo sapiens]
          Length = 2089

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 12/32 (37%), Positives = 21/32 (65%)

Query: 387 SKESDDNYDKTEDVDIEEMALKLDNVLLDTYQ 418
           +K+S+DNY  +ED+D++     L+N  L+  Q
Sbjct: 681 TKDSEDNYGDSEDLDLQATQCFLENQGLEAVQ 712


>gi|206725420 G protein-coupled receptor kinase interacting ArfGAP 2
           isoform 6 [Homo sapiens]
          Length = 681

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 7/51 (13%)

Query: 379 LKAVRKERSKESDDN----YDKT---EDVDIEEMALKLDNVLLDTYQDASS 422
           LK +  + S ES DN    YD     ED D+E  A K +   L T Q  +S
Sbjct: 375 LKTINNQHSVESQDNDQPDYDSVASDEDTDLETTASKTNRQKLQTLQSENS 425


>gi|21237786 G protein-coupled receptor kinase interacting ArfGAP 2
           isoform 3 [Homo sapiens]
          Length = 679

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 7/51 (13%)

Query: 379 LKAVRKERSKESDDN----YDKT---EDVDIEEMALKLDNVLLDTYQDASS 422
           LK +  + S ES DN    YD     ED D+E  A K +   L T Q  +S
Sbjct: 373 LKTINNQHSVESQDNDQPDYDSVASDEDTDLETTASKTNRQKLQTLQSENS 423


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,148,721
Number of Sequences: 37866
Number of extensions: 561341
Number of successful extensions: 1566
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1562
Number of HSP's gapped (non-prelim): 10
length of query: 422
length of database: 18,247,518
effective HSP length: 105
effective length of query: 317
effective length of database: 14,271,588
effective search space: 4524093396
effective search space used: 4524093396
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.