Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: KRT28 Sequence: fasta or formatted (464aa) NCBI GI: 114431246
Description:

keratin 25D

Referenced in:

Keratins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         39           2
 C cysteine            2.4         11           1
 D aspartate           4.1         19           2
 E glutamate           9.7         45           3
 F phenylalanine       1.9          9           1
 G glycine             9.3         43           3
 H histidine           2.6         12           1
 I isoleucine          3.4         16           2
 K lysine              5.4         25           2
 L leucine            11.4         53           2
 M methionine          1.9          9           1
 N asparagine          5.8         27           2
 P proline             1.3          6           1
 Q glutamine           5.2         24           3
 R arginine            5.0         23           2
 S serine              9.1         42           2
 T threonine           5.6         26           3
 V valine              4.5         21           2
 W tryptophan          0.4          2           1
 Y tyrosine            2.6         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   keratin 25D 
KRT27                 0.752   keratin 27 
KRT25                 0.708   keratin 25 
KRT26                 0.652   keratin 26 
KRT10                 0.496   keratin 10 
KRT24                 0.487   keratin 24 
KRT12                 0.463   keratin 12 
KRT14                 0.443   keratin 14 
KRT15                 0.436   keratin 15 
KRT17                 0.435   keratin 17 
KRT16                 0.428   keratin 16 
KRT13                 0.423   keratin 13 isoform a 
KRT13                 0.417   keratin 13 isoform b 
KRT19                 0.393   keratin 19 
KRT36                 0.356   keratin 36 
KRT9                  0.352   keratin 9 
KRT35                 0.330   keratin 35 
KRT20                 0.330   keratin 20 
KRT32                 0.311   keratin 32 
KRT33A                0.308   keratin 33A 
KRT31                 0.304   keratin 31 
KRT33B                0.301   type I hair keratin 3B 
KRT23                 0.292   keratin 23 
KRT18                 0.290   keratin 18 
KRT18                 0.290   keratin 18 
KRT34                 0.289   keratin 34 
KRT40                 0.283   type I hair keratin KA36 
KRT39                 0.275   type I hair keratin KA35 
KRT37                 0.268   keratin 37 
KRT38                 0.266   keratin 38 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press