Guide to the Human Genome
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Name: SEC61A2 Sequence: fasta or formatted (454aa) NCBI GI: 217330618
Description:

Sec61 alpha form 2 isoform b

Referenced in:

ER, Golgi, and the Secretory Pathway

Other entries for this name:
alt prot [476aa] Sec61 alpha form 2 isoform a
alt prot [437aa] Sec61 alpha form 2 isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         37           3
 C cysteine            1.3          6           1
 D aspartate           2.9         13           1
 E glutamate           4.2         19           1
 F phenylalanine       6.4         29           2
 G glycine             9.9         45           3
 H histidine           0.9          4           1
 I isoleucine          9.9         45           3
 K lysine              3.7         17           1
 L leucine            11.0         50           3
 M methionine          3.7         17           1
 N asparagine          2.6         12           1
 P proline             4.2         19           2
 Q glutamine           3.7         17           2
 R arginine            3.7         17           1
 S serine              6.6         30           2
 T threonine           4.4         20           2
 V valine              7.7         35           3
 W tryptophan          0.9          4           1
 Y tyrosine            4.0         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Sec61 alpha form 2 isoform b 
SEC61A2               0.986   Sec61 alpha form 2 isoform a 
SEC61A1               0.935   Sec61 alpha 1 subunit 
SEC61A2               0.850   Sec61 alpha form 2 isoform c 
AQP4                  0.009   aquaporin 4 isoform b 
AQP4                  0.009   aquaporin 4 isoform a 
OR5H15                0.008   olfactory receptor, family 5, subfamily H, member 15...
SLC30A5               0.008   solute carrier family 30 (zinc transporter), member ...
HEPACAM2              0.008   HEPACAM family member 2 isoform 2 
HEPACAM2              0.008   HEPACAM family member 2 isoform 1 
SLC7A14               0.008   solute carrier family 7 (cationic amino acid transp...
OR5H14                0.008   olfactory receptor, family 5, subfamily H, member 14...
OR5H6                 0.007   olfactory receptor, family 5, subfamily H, member 6 ...
APH1B                 0.006   presenilin stabilization factor-like isoform 2 [Hom...
APH1B                 0.006   presenilin stabilization factor-like isoform 1 [Homo...
CACNA1D               0.006   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1D               0.006   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1D               0.006   calcium channel, voltage-dependent, L type, alpha 1D ...
TM7SF4                0.006   dendritic cell-specific transmembrane protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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