Guide to the Human Genome
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Name: TSHR Sequence: fasta or formatted (274aa) NCBI GI: 217330610
Description:

thyroid stimulating hormone receptor isoform 3 precursor

Referenced in:

Organs and Hormones
Leucine-rich Repeat Family
Peptide and Protein G-coupled Signals
Thyroid and Thyroid Hormone Receptor

Other entries for this name:
alt prot [764aa] thyroid stimulating hormone receptor isoform 1 precursor
alt prot [253aa] thyroid stimulating hormone receptor isoform 2 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.3          9           1
 C cysteine            2.2          6           1
 D aspartate           5.1         14           1
 E glutamate           4.0         11           2
 F phenylalanine       5.5         15           2
 G glycine             5.5         15           2
 H histidine           1.8          5           1
 I isoleucine          5.8         16           1
 K lysine              5.8         16           1
 L leucine            14.2         39           3
 M methionine          1.8          5           1
 N asparagine          5.5         15           2
 P proline             6.6         18           2
 Q glutamine           3.3          9           2
 R arginine            4.0         11           1
 S serine              8.8         24           2
 T threonine           7.3         20           1
 V valine              5.1         14           1
 W tryptophan          0.4          1           1
 Y tyrosine            4.0         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   thyroid stimulating hormone receptor isoform 3 prec... 
TSHR                  0.894   thyroid stimulating hormone receptor isoform 2 precu...
TSHR                  0.840   thyroid stimulating hormone receptor isoform 1 precu...
LHCGR                 0.266   luteinizing hormone/choriogonadotropin receptor pre...
FSHR                  0.194   follicle stimulating hormone receptor isoform 2 prec...
FSHR                  0.187   follicle stimulating hormone receptor isoform 1 prec...
LRTM2                 0.060   leucine-rich repeats and transmembrane domains 2 [Ho...
LRRC4B                0.051   leucine rich repeat containing 4B 
LRRC4C                0.049   netrin-G1 ligand 
RTN4R                 0.047   reticulon 4 receptor precursor 
LRRC4                 0.043   leucine rich repeat containing 4 
RTN4RL2               0.040   reticulon 4 receptor-like 2 
LGR4                  0.038   leucine-rich repeat-containing G protein-coupled re...
GP5                   0.038   glycoprotein V (platelet) 
LRTM1                 0.036   leucine-rich repeats and transmembrane domains 1 [Ho...
LRIG1                 0.036   leucine-rich repeats and immunoglobulin-like domains...
CHAD                  0.034   chondroadherin precursor 
LRIG3                 0.032   leucine-rich repeats and immunoglobulin-like domains...
CPN2                  0.032   carboxypeptidase N, polypeptide 2, 83kD 
LGR6                  0.030   leucine-rich repeat-containing G protein-coupled rec...
ISLR                  0.030   immunoglobulin superfamily containing leucine-rich r...
LGR6                  0.030   leucine-rich repeat-containing G protein-coupled rec...
ISLR                  0.030   immunoglobulin superfamily containing leucine-rich re...
LINGO1                0.028   leucine-rich repeat neuronal 6A 
PODN                  0.028   podocan 
VASN                  0.028   slit-like 2 
LRIT1                 0.026   retina specific protein PAL 
DCN                   0.026   decorin isoform a preproprotein 
DCN                   0.026   decorin isoform a preproprotein 
TLR3                  0.026   toll-like receptor 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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