Guide to the Human Genome
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Name: ZNF780A Sequence: fasta or formatted (158aa) NCBI GI: 217035162
Description:

zinc finger protein 780A isoform c

Referenced in:

Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt prot [642aa] zinc finger protein 780A isoform a
alt prot [641aa] zinc finger protein 780A isoform b
alt prot [641aa] zinc finger protein 780A isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.5          4           1
 C cysteine            3.2          5           1
 D aspartate           5.1          8           1
 E glutamate           8.2         13           2
 F phenylalanine       3.2          5           1
 G glycine             3.2          5           1
 H histidine           2.5          4           1
 I isoleucine          7.6         12           1
 K lysine              5.1          8           1
 L leucine             9.5         15           2
 M methionine          2.5          4           1
 N asparagine          3.2          5           1
 P proline             5.7          9           1
 Q glutamine           4.4          7           1
 R arginine            7.0         11           2
 S serine             12.0         19           2
 T threonine           3.8          6           1
 V valine              6.3         10           2
 W tryptophan          1.3          2           1
 Y tyrosine            3.8          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 780A isoform c 
ZNF780A               0.624   zinc finger protein 780A isoform b 
ZNF780A               0.624   zinc finger protein 780A isoform b 
ZNF780A               0.611   zinc finger protein 780A isoform a 
ZNF780B               0.574   zinc finger protein 780B 
ZFP14                 0.359   zinc finger protein 14-like 
ZNF540                0.332   zinc finger protein 540 
ZNF546                0.332   zinc finger protein 546 
ZFP82                 0.329   zinc finger protein 82 homolog 
ZFP30                 0.326   zinc finger protein 30 homolog 
ZNF461                0.309   gonadotropin inducible transcription repressor 1 [Ho...
ZNF566                0.289   zinc finger protein 566 isoform 1 
ZNF566                0.289   zinc finger protein 566 isoform 1 
ZNF566                0.289   zinc finger protein 566 isoform 1 
ZNF527                0.289   zinc finger protein 527 
ZNF565                0.289   zinc finger protein 565 
ZNF565                0.289   zinc finger protein 565 
ZNF582                0.285   zinc finger protein 582 
ZNF140                0.285   zinc finger protein 140 
LOC100291520          0.282   PREDICTED: hypothetical protein XP_002347975 isofor...
ZNF383                0.275   zinc finger protein 383 
ZNF583                0.275   zinc finger protein 583 
ZNF583                0.275   zinc finger protein 583 
ZNF583                0.275   zinc finger protein 583 
ZNF566                0.272   zinc finger protein 566 isoform 2 
ZNF790                0.272   zinc finger protein 790 
ZNF470                0.268   zinc finger protein 470 
ZNF607                0.268   zinc finger protein 607 
ZNF267                0.268   zinc finger protein 267 
ZFP28                 0.268   zinc finger protein 28 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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