Guide to the Human Genome
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Name: LOC147646 Sequence: fasta or formatted (186aa) NCBI GI: 113428351
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {186aa} PREDICTED: hypothetical protein
alt prot {186aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         16           2
 C cysteine            2.2          4           2
 D aspartate           2.7          5           1
 E glutamate           7.0         13           1
 F phenylalanine       0.5          1           1
 G glycine            12.4         23           2
 H histidine           2.7          5           1
 I isoleucine          0.5          1           1
 K lysine              1.6          3           2
 L leucine            11.3         21           3
 M methionine          1.1          2           1
 N asparagine          1.6          3           2
 P proline            17.7         33           3
 Q glutamine           3.8          7           2
 R arginine            8.1         15           2
 S serine              6.5         12           2
 T threonine           5.9         11           1
 V valine              2.7          5           1
 W tryptophan          2.2          4           1
 Y tyrosine            1.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC147646             0.995   PREDICTED: hypothetical protein 
LOC147646             0.995   PREDICTED: hypothetical protein 
LOC100292387          0.058   PREDICTED: similar to hemicentin 2 
BCL9L                 0.050   B-cell CLL/lymphoma 9-like 
PRNP                  0.042   prion protein preproprotein 
PRNP                  0.042   prion protein preproprotein 
PRNP                  0.042   prion protein preproprotein 
PRNP                  0.042   prion protein preproprotein 
PRNP                  0.042   prion protein preproprotein 
NACA                  0.040   nascent polypeptide-associated complex alpha subuni...
LOC100293994          0.037   PREDICTED: hypothetical protein 
LOC100288305          0.037   PREDICTED: hypothetical protein 
SH3BP1                0.037   SH3-domain binding protein 1 
LOC100292287          0.034   PREDICTED: hypothetical protein 
LOC100289576          0.034   PREDICTED: hypothetical protein 
LOC100289576          0.034   PREDICTED: hypothetical protein XP_002343622 
KLF2                  0.034   Kruppel-like factor 
RBM15B                0.034   RNA binding motif protein 15B 
KLHL17                0.034   kelch-like 17 
SYNCRIP               0.034   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.034   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.034   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.034   synaptotagmin binding, cytoplasmic RNA interacting ...
LGALS3                0.034   galectin 3 
SNAPC4                0.034   small nuclear RNA activating complex, polypeptide 4,...
YLPM1                 0.034   YLP motif containing 1 
LOC100292801          0.032   PREDICTED: hypothetical protein 
LOC100290691          0.032   PREDICTED: hypothetical protein XP_002347934 
LOC100288156          0.032   PREDICTED: hypothetical protein XP_002344202 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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