Guide to the Human Genome
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Name: CTAG1A Sequence: fasta or formatted (180aa) NCBI GI: 21281685
Description:

cancer/testis antigen 1A

Referenced in:

Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.2         22           2
 C cysteine            2.8          5           2
 D aspartate           2.8          5           1
 E glutamate           3.9          7           1
 F phenylalanine       2.8          5           1
 G glycine            19.4         35           3
 H histidine           1.1          2           1
 I isoleucine          2.8          5           1
 K lysine              0.6          1           1
 L leucine            10.6         19           2
 M methionine          2.2          4           1
 N asparagine          1.7          3           1
 P proline            10.6         19           2
 Q glutamine           5.0          9           2
 R arginine            7.8         14           2
 S serine              6.1         11           2
 T threonine           4.4          8           1
 V valine              2.2          4           1
 W tryptophan          0.6          1           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cancer/testis antigen 1A 
CTAG1B                1.000   cancer/testis antigen 1B 
CTAG2                 0.840   cancer/testis antigen 2 isoform LAGE-1a 
CTAG2                 0.590   cancer/testis antigen 2 isoform LAGE-1b 
LOC100293202          0.201   PREDICTED: similar to CTL-recognized antigen on mel...
LAGE3                 0.166   L antigen family, member 3 
COL1A1                0.095   alpha 1 type I collagen preproprotein 
COL11A1               0.080   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.080   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.080   alpha 1 type XI collagen isoform A preproprotein [Ho...
LOC100293055          0.080   PREDICTED: similar to COL22A1 protein 
COL2A1                0.080   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.080   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL3A1                0.077   collagen type III alpha 1 preproprotein 
COL1A2                0.077   alpha 2 type I collagen 
COL12A1               0.077   collagen, type XII, alpha 1 short isoform precursor ...
COL12A1               0.077   collagen, type XII, alpha 1 long isoform precursor [...
KRT10                 0.077   keratin 10 
COL11A2               0.074   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.074   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.074   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL9A3                0.074   alpha 3 type IX collagen 
POU4F1                0.074   POU domain, class 4, transcription factor 1 
COL14A1               0.072   collagen, type XIV, alpha 1 
COL7A1                0.072   alpha 1 type VII collagen precursor 
COL28A1               0.072   collagen, type XXVIII precursor 
COL6A3                0.072   alpha 3 type VI collagen isoform 5 precursor 
COL6A3                0.072   alpha 3 type VI collagen isoform 1 precursor 
COL6A3                0.072   alpha 3 type VI collagen isoform 4 precursor 
COL22A1               0.072   collagen, type XXII, alpha 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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