LITAF 12568

Name: LITAF	Sequence: fasta or formatted (152aa)		NCBI GI: 210147507
Description: lipopolysaccharide-induced TNF-alpha factor isoform 2		Referenced in: Lysosomes and Related Organelles
Other entries for this name: alt prot [161aa] lipopolysaccharide-induced TNF-alpha factor isoform 1 alt prot [161aa] lipopolysaccharide-induced TNF-alpha factor isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.2 11 2 C cysteine 4.6 7 2 D aspartate 2.0 3 1 E glutamate 2.0 3 2 F phenylalanine 1.3 2 1 G glycine 7.9 12 1 H histidine 0.7 1 1 I isoleucine 3.9 6 1 K lysine 1.3 2 1 L leucine 7.2 11 2 M methionine 3.3 5 1 N asparagine 5.3 8 3 P proline 15.8 24 2 Q glutamine 4.6 7 1 R arginine 1.3 2 1 S serine 11.8 18 2 T threonine 7.9 12 2 V valine 5.9 9 1 W tryptophan 0.7 1 1 Y tyrosine 5.3 8 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 lipopolysaccharide-induced TNF-alpha factor isoform... LITAF 0.829 lipopolysaccharide-induced TNF-alpha factor isoform... LITAF 0.829 lipopolysaccharide-induced TNF-alpha factor isoform ... C16orf5 0.080 cell death inducing protein NACA 0.047 nascent polypeptide-associated complex alpha subuni... MED15 0.043 mediator complex subunit 15 isoform a MED15 0.043 mediator complex subunit 15 isoform b MUC7 0.043 mucin 7, secreted precursor MUC7 0.043 mucin 7, secreted precursor MUC7 0.043 mucin 7, secreted precursor TPRX1 0.040 tetra-peptide repeat homeobox ATN1 0.040 atrophin-1 ATN1 0.040 atrophin-1 C17orf96 0.033 hypothetical protein LOC100170841 SORBS1 0.033 sorbin and SH3 domain containing 1 isoform 4 BAT2 0.033 HLA-B associated transcript-2 EPN1 0.033 epsin 1 isoform c EPN1 0.033 epsin 1 isoform b EPN1 0.033 epsin 1 isoform a TSC22D2 0.033 TSC22 domain family, member 2 MAPK1IP1L 0.033 MAPK-interacting and spindle-stabilizing protein [Ho... MUC2 0.033 mucin 2 precursor PACRG 0.033 parkin co-regulated gene protein isoform 1 DGKK 0.033 diacylglycerol kinase kappa C11orf9 0.033 hypothetical protein LOC745 isoform 1 C11orf9 0.033 hypothetical protein LOC745 isoform 2 CDKN1C 0.030 cyclin-dependent kinase inhibitor 1C isoform b [Hom... CDKN1C 0.030 cyclin-dependent kinase inhibitor 1C isoform b [Hom... CDKN1C 0.030 cyclin-dependent kinase inhibitor 1C isoform a ENAH 0.030 enabled homolog isoform a Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.