Guide to the Human Genome
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Name: MFSD3 Sequence: fasta or formatted (412aa) NCBI GI: 19923957
Description:

major facilitator superfamily domain containing 3

Referenced in:

Protein Composition and Structure
Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.1         58           3
 C cysteine            1.5          6           1
 D aspartate           2.2          9           1
 E glutamate           1.5          6           1
 F phenylalanine       2.7         11           1
 G glycine            11.7         48           2
 H histidine           1.9          8           1
 I isoleucine          0.7          3           1
 K lysine              1.9          8           1
 L leucine            25.2        104           5
 M methionine          1.2          5           2
 N asparagine          0.7          3           1
 P proline             6.6         27           3
 Q glutamine           3.9         16           2
 R arginine            3.6         15           2
 S serine              4.9         20           2
 T threonine           5.3         22           2
 V valine              6.3         26           2
 W tryptophan          2.2          9           1
 Y tyrosine            1.9          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   major facilitator superfamily domain containing 3 [H... 
SLC33A1               0.052   acetyl-coenzyme A transporter 
TMEM198               0.015   transmembrane protein 198 
LOC401399             0.010   hypothetical protein LOC401399 
SLC22A18              0.010   tumor suppressing subtransferable candidate 5 [Homo...
SLC22A18              0.010   tumor suppressing subtransferable candidate 5 [Homo...
CYP2W1                0.009   cytochrome P450, family 2, subfamily W, polypeptide ...
ABCC10                0.009   ATP-binding cassette, sub-family C, member 10 
NAGLU                 0.009   alpha-N-acetylglucosaminidase precursor 
TMCO4                 0.009   transmembrane and coiled-coil domains 4 
ASTN2                 0.008   astrotactin 2 isoform c 
ASTN2                 0.008   astrotactin 2 isoform b 
ASTN2                 0.008   astrotactin 2 isoform a 
LOC100291924          0.008   PREDICTED: similar to astrotactin 2 
ABCA7                 0.008   ATP-binding cassette, sub-family A, member 7 
SLC16A13              0.006   monocarboxylate transporter 13 
LOC440104             0.006   PREDICTED: hypothetical protein LOC440104 isoform 1...
LOC440104             0.006   PREDICTED: similar to RIKEN cDNA 1110012D08 
LOC440104             0.006   PREDICTED: hypothetical protein LOC440104 
HHAT                  0.006   hedgehog acyltransferase 
HHAT                  0.006   hedgehog acyltransferase 
RICH2                 0.006   Rho GTPase-activating protein RICH2 
LOC390213             0.006   PREDICTED: similar to hCG21066 
LOC390213             0.006   PREDICTED: similar to hCG21066 
LOC390213             0.006   PREDICTED: hypothetical protein LOC390213 
RHBDD3                0.006   rhomboid domain containing 3 
HDAC10                0.006   histone deacetylase 10 isoform 2 
HDAC10                0.006   histone deacetylase 10 isoform 1 
NHS                   0.005   Nance-Horan syndrome protein isoform 1 
SLC16A11              0.005   solute carrier family 16, member 11 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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