Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CCDC77 Sequence: fasta or formatted (456aa) NCBI GI: 194306660
Description:

coiled-coil domain containing 77 isoform b

Referenced in:

Coiled-Coil Proteins

Other entries for this name:
alt prot [488aa] coiled-coil domain containing 77 isoform a
alt mRNA [456aa] coiled-coil domain containing 77 isoform b
alt mRNA [456aa] coiled-coil domain containing 77 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         22           1
 C cysteine            2.2         10           1
 D aspartate           4.4         20           1
 E glutamate          13.8         63           3
 F phenylalanine       1.5          7           1
 G glycine             2.6         12           1
 H histidine           2.9         13           2
 I isoleucine          5.0         23           1
 K lysine             11.4         52           3
 L leucine            12.9         59           2
 M methionine          2.4         11           1
 N asparagine          3.5         16           1
 P proline             2.0          9           2
 Q glutamine           7.9         36           2
 R arginine            7.5         34           3
 S serine              5.5         25           2
 T threonine           3.1         14           1
 V valine              3.7         17           1
 W tryptophan          0.2          1           1
 Y tyrosine            2.6         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   coiled-coil domain containing 77 isoform b 
CCDC77                1.000   coiled-coil domain containing 77 isoform b 
CCDC77                1.000   coiled-coil domain containing 77 isoform a 
CCDC77                1.000   coiled-coil domain containing 77 isoform b 
LOC645202             0.056   PREDICTED: hypothetical protein LOC645202 
ERC2                  0.054   cytomatrix protein p110 
CGN                   0.051   cingulin 
EEA1                  0.048   early endosome antigen 1, 162kD 
CLIP1                 0.048   restin isoform b 
CLIP1                 0.048   restin isoform a 
LOC283767             0.047   golgi autoantigen, golgin subfamily a-like 
LOC727832             0.046   golgi autoantigen, golgin subfamily a-like 
LOC440243             0.046   PREDICTED: Putative golgin subfamily A member 6-lik...
GOLGA4                0.046   golgi autoantigen, golgin subfamily a, 4 
CEP250                0.046   centrosomal protein 2 
LOC100133758          0.046   PREDICTED: hypothetical protein, partial 
CCDC88A               0.045   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.045   coiled-coil domain containing 88A isoform 1 
AKAP9                 0.045   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.045   A-kinase anchor protein 9 isoform 3 
CENPE                 0.045   centromere protein E 
CXorf15               0.045   gamma-taxilin 
CDK5RAP2              0.044   CDK5 regulatory subunit associated protein 2 isoform...
CDK5RAP2              0.044   CDK5 regulatory subunit associated protein 2 isoform...
MYH9                  0.042   myosin, heavy polypeptide 9, non-muscle 
MYH8                  0.042   myosin, heavy chain 8, skeletal muscle, perinatal [...
MYH13                 0.042   myosin, heavy polypeptide 13, skeletal muscle [Homo...
ROCK1                 0.042   Rho-associated, coiled-coil containing protein kinase...
TCHH                  0.042   trichohyalin 
CCDC88C               0.042   DVL-binding protein DAPLE 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press