Guide to the Human Genome
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Search of human proteins with 190358532

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|190358532 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H box 1 isoform a
[Homo sapiens]
         (1028 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|190358536 SWI/SNF-related, matrix-associated actin-dependent ...  2043   0.0  
gi|190358532 SWI/SNF-related, matrix-associated actin-dependent ...  2043   0.0  
gi|190358534 SWI/SNF-related, matrix-associated actin-dependent ...  2035   0.0  
gi|21914927 helicase, lymphoid-specific [Homo sapiens]                337   4e-92
gi|164419749 SWI/SNF-related matrix-associated actin-dependent r...   322   9e-88
gi|21071058 SWI/SNF-related matrix-associated actin-dependent re...   319   1e-86
gi|21071044 SWI/SNF-related matrix-associated actin-dependent re...   313   4e-85
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r...   305   2e-82
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r...   305   2e-82
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r...   305   2e-82
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r...   305   2e-82
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r...   305   2e-82
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r...   305   2e-82
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re...   305   2e-82
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re...   301   2e-81
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re...   301   2e-81
gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa...   298   2e-80
gi|118421089 chromodomain helicase DNA binding protein 2 isoform...   298   2e-80
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa...   277   4e-74
gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa...   274   3e-73
gi|114326455 chromodomain helicase DNA binding protein 8 [Homo s...   273   6e-73
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa...   273   6e-73
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ...   271   3e-72
gi|52630322 chromodomain helicase DNA binding protein 3 isoform ...   271   3e-72
gi|158420731 chromodomain helicase DNA binding protein 3 isoform...   271   3e-72
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa...   268   1e-71
gi|148612870 chromodomain helicase DNA binding protein 1-like [H...   262   1e-69
gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa...   249   9e-66
gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription facto...   248   2e-65
gi|4557565 excision repair cross-complementing rodent repair def...   241   2e-63

>gi|190358536 SWI/SNF-related, matrix-associated actin-dependent
            regulator of chromatin, subfamily a, containing DEAD/H
            box 1 isoform a [Homo sapiens]
          Length = 1028

 Score = 2043 bits (5294), Expect = 0.0
 Identities = 1028/1028 (100%), Positives = 1028/1028 (100%)

Query: 1    MNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGEVSRANTPDSDIT 60
            MNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGEVSRANTPDSDIT
Sbjct: 1    MNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGEVSRANTPDSDIT 60

Query: 61   EKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSNTVQEKTFNKDTV 120
            EKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSNTVQEKTFNKDTV
Sbjct: 61   EKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSNTVQEKTFNKDTV 120

Query: 121  IIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDAKLQTLKELFPQRSDNDLLKL 180
            IIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDAKLQTLKELFPQRSDNDLLKL
Sbjct: 121  IIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDAKLQTLKELFPQRSDNDLLKL 180

Query: 181  IESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSIKKTRLDHGEESN 240
            IESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSIKKTRLDHGEESN
Sbjct: 181  IESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSIKKTRLDHGEESN 240

Query: 241  ESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAEDQDMQY 300
            ESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAEDQDMQY
Sbjct: 241  ESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAEDQDMQY 300

Query: 301  VSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVVEDSEY 360
            VSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVVEDSEY
Sbjct: 301  VSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVVEDSEY 360

Query: 361  DSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKITELRP 420
            DSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKITELRP
Sbjct: 361  DSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKITELRP 420

Query: 421  FNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTGNG 480
            FNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTGNG
Sbjct: 421  FNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTGNG 480

Query: 481  GGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLY 540
            GGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLY
Sbjct: 481  GGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLY 540

Query: 541  QEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVI 600
            QEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVI
Sbjct: 541  QEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVI 600

Query: 601  VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV 660
            VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV
Sbjct: 601  VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV 660

Query: 661  QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFIL 720
            QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFIL
Sbjct: 661  QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFIL 720

Query: 721  RRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQL 780
            RRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQL
Sbjct: 721  RRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQL 780

Query: 781  RKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYR 840
            RKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYR
Sbjct: 781  RKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYR 840

Query: 841  HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL 900
            HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL
Sbjct: 841  HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL 900

Query: 901  RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQ 960
            RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQ
Sbjct: 901  RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQ 960

Query: 961  AEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIAT 1020
            AEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIAT
Sbjct: 961  AEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIAT 1020

Query: 1021 LLKTSMGL 1028
            LLKTSMGL
Sbjct: 1021 LLKTSMGL 1028


>gi|190358532 SWI/SNF-related, matrix-associated actin-dependent
            regulator of chromatin, subfamily a, containing DEAD/H
            box 1 isoform a [Homo sapiens]
          Length = 1028

 Score = 2043 bits (5294), Expect = 0.0
 Identities = 1028/1028 (100%), Positives = 1028/1028 (100%)

Query: 1    MNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGEVSRANTPDSDIT 60
            MNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGEVSRANTPDSDIT
Sbjct: 1    MNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGEVSRANTPDSDIT 60

Query: 61   EKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSNTVQEKTFNKDTV 120
            EKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSNTVQEKTFNKDTV
Sbjct: 61   EKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSNTVQEKTFNKDTV 120

Query: 121  IIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDAKLQTLKELFPQRSDNDLLKL 180
            IIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDAKLQTLKELFPQRSDNDLLKL
Sbjct: 121  IIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDAKLQTLKELFPQRSDNDLLKL 180

Query: 181  IESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSIKKTRLDHGEESN 240
            IESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSIKKTRLDHGEESN
Sbjct: 181  IESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSIKKTRLDHGEESN 240

Query: 241  ESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAEDQDMQY 300
            ESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAEDQDMQY
Sbjct: 241  ESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAEDQDMQY 300

Query: 301  VSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVVEDSEY 360
            VSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVVEDSEY
Sbjct: 301  VSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVVEDSEY 360

Query: 361  DSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKITELRP 420
            DSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKITELRP
Sbjct: 361  DSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKITELRP 420

Query: 421  FNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTGNG 480
            FNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTGNG
Sbjct: 421  FNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTGNG 480

Query: 481  GGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLY 540
            GGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLY
Sbjct: 481  GGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLY 540

Query: 541  QEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVI 600
            QEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVI
Sbjct: 541  QEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVI 600

Query: 601  VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV 660
            VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV
Sbjct: 601  VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV 660

Query: 661  QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFIL 720
            QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFIL
Sbjct: 661  QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFIL 720

Query: 721  RRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQL 780
            RRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQL
Sbjct: 721  RRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQL 780

Query: 781  RKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYR 840
            RKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYR
Sbjct: 781  RKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYR 840

Query: 841  HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL 900
            HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL
Sbjct: 841  HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL 900

Query: 901  RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQ 960
            RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQ
Sbjct: 901  RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQ 960

Query: 961  AEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIAT 1020
            AEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIAT
Sbjct: 961  AEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIAT 1020

Query: 1021 LLKTSMGL 1028
            LLKTSMGL
Sbjct: 1021 LLKTSMGL 1028


>gi|190358534 SWI/SNF-related, matrix-associated actin-dependent
            regulator of chromatin, subfamily a, containing DEAD/H
            box 1 isoform b [Homo sapiens]
          Length = 1026

 Score = 2035 bits (5272), Expect = 0.0
 Identities = 1026/1028 (99%), Positives = 1026/1028 (99%), Gaps = 2/1028 (0%)

Query: 1    MNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGEVSRANTPDSDIT 60
            MNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGEVSRANTPDSDIT
Sbjct: 1    MNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGEVSRANTPDSDIT 60

Query: 61   EKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSNTVQEKTFNKDTV 120
            EKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSNTVQEKTFNKDTV
Sbjct: 61   EKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSNTVQEKTFNKDTV 120

Query: 121  IIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDAKLQTLKELFPQRSDNDLLKL 180
            IIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDAKLQTLKELFPQRSDNDLLKL
Sbjct: 121  IIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDAKLQTLKELFPQRSDNDLLKL 180

Query: 181  IESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSIKKTRLDHGEESN 240
            IESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSIKKTRLDHGEESN
Sbjct: 181  IESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSIKKTRLDHGEESN 240

Query: 241  ESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAEDQDMQY 300
            ESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAEDQDMQY
Sbjct: 241  ESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAEDQDMQY 300

Query: 301  VSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVVEDSEY 360
            VSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVVEDSEY
Sbjct: 301  VSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVVEDSEY 360

Query: 361  DSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKITELRP 420
            DSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKITELRP
Sbjct: 361  DSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKITELRP 420

Query: 421  FNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTGNG 480
            FNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTGNG
Sbjct: 421  FNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTGNG 480

Query: 481  GGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLY 540
            GGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLY
Sbjct: 481  GGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLY 540

Query: 541  QEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVI 600
            QEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVI
Sbjct: 541  QEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVI 600

Query: 601  VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV 660
            VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV
Sbjct: 601  VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV 660

Query: 661  QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFIL 720
            QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFIL
Sbjct: 661  QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFIL 720

Query: 721  RRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQL 780
            RRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNL  EKNTEMCNVMMQL
Sbjct: 721  RRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNL--EKNTEMCNVMMQL 778

Query: 781  RKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYR 840
            RKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYR
Sbjct: 779  RKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYR 838

Query: 841  HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL 900
            HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL
Sbjct: 839  HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL 898

Query: 901  RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQ 960
            RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQ
Sbjct: 899  RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQ 958

Query: 961  AEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIAT 1020
            AEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIAT
Sbjct: 959  AEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIAT 1018

Query: 1021 LLKTSMGL 1028
            LLKTSMGL
Sbjct: 1019 LLKTSMGL 1026


>gi|21914927 helicase, lymphoid-specific [Homo sapiens]
          Length = 838

 Score =  337 bits (863), Expect = 4e-92
 Identities = 204/544 (37%), Positives = 314/544 (57%), Gaps = 26/544 (4%)

Query: 479  NGGGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAY 538
            NG     +QP      + ++ YQ  G+ WL ++ ++G+NGILADEMGLGKT+Q IA +A 
Sbjct: 206  NGQPVPFQQPKHFTGGV-MRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIAL 264

Query: 539  LYQEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSR---YE 595
            + Q G  GP L+  P ST+ NW+ E   + P +  + Y+G+QEER+++  NI+ R    +
Sbjct: 265  MIQRGVPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVRNIYKRKGTLQ 324

Query: 596  DYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLL 655
             + V++T++  A+    DR+  +     Y I DEGH +KNM     + L   NA+N+LLL
Sbjct: 325  IHPVVITSFEIAMR---DRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLL 381

Query: 656  TGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKER---IAHA- 711
            TGTP+QNNL EL SLLNF++P +F    S     F   + S   + I  KER   + H  
Sbjct: 382  TGTPLQNNLSELWSLLNFLLPDVFDDLKS-FESWFDITSLSETAEDIIAKEREQNVLHML 440

Query: 712  KQIIKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNT 771
             QI+ PF+LRR+K +V  ++PPK++ +    +S+KQE  Y  + NR   ++     ++  
Sbjct: 441  HQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGSSEKETI 500

Query: 772  EMCNV---MMQLRKMANHPLLHRQYYTAEKLKEMSQLML-KEPTHCEANPDLIFE-DMEV 826
            E+        + RK  N+  +       EKL    Q  + +E    E N  +  E ++++
Sbjct: 501  ELSPTGRPKRRTRKSINYSKIDDFPNELEKLISQIQPEVDRERAVVEVNIPVESEVNLKL 560

Query: 827  MTDFELHVLCKQYRHI---------NNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVL 877
                 L   C  + ++           F++D +L+ +SGKF +L  +L ELK++G +V+L
Sbjct: 561  QNIMMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLL 620

Query: 878  FSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLG 937
            FSQ T MLDIL          + RLDG    SER   +  FNTD ++F+FL+ST+AGGLG
Sbjct: 621  FSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLG 680

Query: 938  INLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKL 997
            INLT+A+ VI++D D NP +D QA+DRCHR+GQTK V+V +L++  TI++ +++    K 
Sbjct: 681  INLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKR 740

Query: 998  KLEQ 1001
            KLE+
Sbjct: 741  KLEK 744


>gi|164419749 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a1 isoform b [Homo sapiens]
          Length = 1042

 Score =  322 bits (826), Expect = 9e-88
 Identities = 195/515 (37%), Positives = 288/515 (55%), Gaps = 61/515 (11%)

Query: 497  LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPAS 555
            L+ YQ  GLNWL  ++++G+NGILADEMGLGKT+Q IA L YL    N  GPH+++VP S
Sbjct: 183  LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 242

Query: 556  TIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRS 615
            T+ NW+ E   W P+L+V+C+ G ++ R            +++V VT+Y   I    ++S
Sbjct: 243  TLHNWMNEFKRWVPSLRVICFVGDKDARAAF-IRDEMMPGEWDVCVTSYEMVIK---EKS 298

Query: 616  LFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVM 675
            +F++    Y + DE H +KN  S   + +    + NRLLLTGTP+QNNL EL +LLNF++
Sbjct: 299  VFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLL 358

Query: 676  PHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKEEVLKQLPPKK 735
            P +F+S+  +    F +K    D++ +   ER+ HA  ++KPF+LRR+K +V K LPPKK
Sbjct: 359  PDVFNSA-DDFDSWFDTKNCLGDQKLV---ERL-HA--VLKPFLLRRIKTDVEKSLPPKK 411

Query: 736  DRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQLRKMANHPLLHRQYYT 795
            +      +S+ Q + Y  +  +    +N+        + N++MQLRK  NHP L      
Sbjct: 412  EIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLF----- 466

Query: 796  AEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLILDS 855
                              E  P                           +  D  ++ +S
Sbjct: 467  ---------------DGAEPGPP--------------------------YTTDEHIVSNS 485

Query: 856  GKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLI 915
            GK  VL  +L++LK++G RV++FSQ T +LDILE       + Y RLDG+T   ER   I
Sbjct: 486  GKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAI 545

Query: 916  DEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEV 974
            + FN  +   F+F+LST+AGGLGINL SA+VVIL+D D NP  D QA DR HR+GQ K V
Sbjct: 546  EAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPV 605

Query: 975  LVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEG 1009
             V +LI+  T+EE +  + + ++KL  D   + +G
Sbjct: 606  RVFRLITDNTVEERI--VERAEIKLRLDSIVIQQG 638


>gi|21071058 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a5 [Homo sapiens]
          Length = 1052

 Score =  319 bits (817), Expect = 1e-86
 Identities = 192/506 (37%), Positives = 283/506 (55%), Gaps = 59/506 (11%)

Query: 497  LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPAS 555
            L+ YQ  GLNWL  ++++G+NGILADEMGLGKT+Q I+ L Y+    N  GPH+++VP S
Sbjct: 180  LRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKS 239

Query: 556  TIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRS 615
            T+ NW+ E   W PTL+ +C  G +E+R     ++    E ++V VT+Y   I    ++S
Sbjct: 240  TLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGE-WDVCVTSYEMLIK---EKS 295

Query: 616  LFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVM 675
            +F++    Y + DE H +KN  S   + +      NRLLLTGTP+QNNL EL SLLNF++
Sbjct: 296  VFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLL 355

Query: 676  PHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKEEVLKQLPPKK 735
            P +F+S+  +    F +     D++ +   ER+     +++PF+LRR+K +V K LPPKK
Sbjct: 356  PDVFNSA-DDFDSWFDTNNCLGDQKLV---ERL---HMVLRPFLLRRIKADVEKSLPPKK 408

Query: 736  DRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQLRKMANHPLLHRQYYT 795
            +      +S+ Q + Y  +  +    +N+        + N++MQLRK  NHP L      
Sbjct: 409  EVKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLF----- 463

Query: 796  AEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLILDS 855
                              E  P                           +  DM L+ +S
Sbjct: 464  ---------------DGAEPGPP--------------------------YTTDMHLVTNS 482

Query: 856  GKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLI 915
            GK  VL  +L +LK++G RV++FSQ T +LDILE       + Y RLDG+T   ER   I
Sbjct: 483  GKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSI 542

Query: 916  DEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEV 974
            + +N  +   FVF+LST+AGGLGINL +A+VVIL+D D NP  D QA DR HR+GQTK V
Sbjct: 543  NAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTV 602

Query: 975  LVIKLISQGTIEESMLKINQQKLKLE 1000
             V + I+  T+EE +++  + KL+L+
Sbjct: 603  RVFRFITDNTVEERIVERAEMKLRLD 628


>gi|21071044 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a1 isoform a [Homo sapiens]
          Length = 1054

 Score =  313 bits (803), Expect = 4e-85
 Identities = 195/527 (37%), Positives = 288/527 (54%), Gaps = 73/527 (13%)

Query: 497  LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPAS 555
            L+ YQ  GLNWL  ++++G+NGILADEMGLGKT+Q IA L YL    N  GPH+++VP S
Sbjct: 183  LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 242

Query: 556  TIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRS 615
            T+ NW+ E   W P+L+V+C+ G ++ R            +++V VT+Y   I    ++S
Sbjct: 243  TLHNWMNEFKRWVPSLRVICFVGDKDARAAF-IRDEMMPGEWDVCVTSYEMVIK---EKS 298

Query: 616  LFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVM 675
            +F++    Y + DE H +KN  S   + +    + NRLLLTGTP+QNNL EL +LLNF++
Sbjct: 299  VFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLL 358

Query: 676  PHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKEEVLKQLPPKK 735
            P +F+S+  +    F +K    D++ +   ER+ HA  ++KPF+LRR+K +V K LPPKK
Sbjct: 359  PDVFNSA-DDFDSWFDTKNCLGDQKLV---ERL-HA--VLKPFLLRRIKTDVEKSLPPKK 411

Query: 736  DRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQLRKMANHPLLHRQYYT 795
            +      +S+ Q + Y  +  +    +N+        + N++MQLRK  NHP L      
Sbjct: 412  EIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLF----- 466

Query: 796  AEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLILDS 855
                              E  P                           +  D  ++ +S
Sbjct: 467  ---------------DGAEPGPP--------------------------YTTDEHIVSNS 485

Query: 856  GKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISER---- 911
            GK  VL  +L++LK++G RV++FSQ T +LDILE       + Y RLDG+T   ER    
Sbjct: 486  GKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKF 545

Query: 912  --------IHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAE 962
                       I+ FN  +   F+F+LST+AGGLGINL SA+VVIL+D D NP  D QA 
Sbjct: 546  LEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAM 605

Query: 963  DRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEG 1009
            DR HR+GQ K V V +LI+  T+EE +  + + ++KL  D   + +G
Sbjct: 606  DRAHRIGQKKPVRVFRLITDNTVEERI--VERAEIKLRLDSIVIQQG 650


>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a4 isoform A [Homo sapiens]
          Length = 1679

 Score =  305 bits (780), Expect = 2e-82
 Identities = 275/943 (29%), Positives = 428/943 (45%), Gaps = 120/943 (12%)

Query: 125  EPSEDEESQGLPTMARRNDDISELEDL--SELEDLKDAKLQTLKELFPQRSDNDLLKLIE 182
            +P E  + +     AR    I ELE+L  S   DL+      LK L        L + + 
Sbjct: 362  DPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVV 421

Query: 183  STSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSI---KKTRLDHGEES 239
                 D A+  AL          ++ K  S  E    ++    Q I   +K R  H E  
Sbjct: 422  VCMRRDTALETAL-----NAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYL 476

Query: 240  NESAESSSNWEKQESIVL----KLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAED 295
            N   + + ++++    V     KL K    +     RE  KE+E +  E +  L    E+
Sbjct: 477  NSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEE 536

Query: 296  QDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVV 355
               + + Q +      +  ++  Y  N T+   + K +  A+    KK+KK   N     
Sbjct: 537  GYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAEN----A 592

Query: 356  EDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKI 415
            E      G D G  LDE     +  +      K++H ++   I   T  P+  Q +A   
Sbjct: 593  EGQTPAIGPD-GEPLDETSQMSDLPV------KVIH-VESGKILTGTDAPKAGQLEAW-- 642

Query: 416  TELRPFNSWEALFTKMSKTNGLSEDL-----------------IWHCKTL-------IQE 451
             E+ P   +E      S+ +G  E+                  +   K +       + E
Sbjct: 643  LEMNP--GYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700

Query: 452  RDVVIRLMNKCEDISNKLTKQVTMLTGNGGGW--------NIEQPSILNQSLSLKPYQKV 503
             D    + N  +D+ ++      +  G    +         +++ S L  +  LK YQ  
Sbjct: 701  VDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIK 760

Query: 504  GLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPASTIDNWLR 562
            GL WL  ++ + LNGILADEMGLGKTIQ IA + YL +    NGP LI+VP ST+ NW  
Sbjct: 761  GLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAY 820

Query: 563  EVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKL 622
            E + W P++  + Y GS   R+   F    R   +NV++TTY   I    D+ +  +++ 
Sbjct: 821  EFDKWAPSVVKVSYKGSPAARR--AFVPQLRSGKFNVLLTTYEYIIK---DKHILAKIRW 875

Query: 623  NYAIFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSS 681
             Y I DEGH +KN      Q L T   A  RLLLTGTP+QN L EL +LLNF++P +F S
Sbjct: 876  KYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKS 935

Query: 682  STSEIRRMFSSKTKSADEQSIYEKER---IAHAKQIIKPFILRRVKEEVLKQLPPKKDRI 738
             ++  +   +    + ++  + E+E    I    ++++PF+LRR+K+EV  QLP K + +
Sbjct: 936  CSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYV 995

Query: 739  ELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTE-------MCNVMMQLRKMANHPLLHR 791
              C MS  Q  LY  +  + K  +    +EK+ +       + N +MQLRK+ NHP +  
Sbjct: 996  IKCDMSALQRVLYRHM--QAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYM-- 1051

Query: 792  QYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDL 851
                                         F+ +E    F  H+              +DL
Sbjct: 1052 -----------------------------FQHIE--ESFSEHL-----GFTGGIVQGLDL 1075

Query: 852  ILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISER 911
               SGKF +L  IL +L+    +V+LF Q T ++ I+E    +   +YLRLDG T+  +R
Sbjct: 1076 YRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDR 1135

Query: 912  IHLIDEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQ 970
              L+  FN    + F+FLLST+AGGLG+NL SA+ VI+ D D NP+ D QA+DR HR+GQ
Sbjct: 1136 GMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQ 1195

Query: 971  TKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGS 1013
              EV V++L +  ++EE +L   + KL ++Q +      D+ S
Sbjct: 1196 QNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKS 1238


>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a4 isoform F [Homo sapiens]
          Length = 1613

 Score =  305 bits (780), Expect = 2e-82
 Identities = 275/943 (29%), Positives = 428/943 (45%), Gaps = 120/943 (12%)

Query: 125  EPSEDEESQGLPTMARRNDDISELEDL--SELEDLKDAKLQTLKELFPQRSDNDLLKLIE 182
            +P E  + +     AR    I ELE+L  S   DL+      LK L        L + + 
Sbjct: 362  DPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVV 421

Query: 183  STSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSI---KKTRLDHGEES 239
                 D A+  AL          ++ K  S  E    ++    Q I   +K R  H E  
Sbjct: 422  VCMRRDTALETAL-----NAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYL 476

Query: 240  NESAESSSNWEKQESIVL----KLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAED 295
            N   + + ++++    V     KL K    +     RE  KE+E +  E +  L    E+
Sbjct: 477  NSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEE 536

Query: 296  QDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVV 355
               + + Q +      +  ++  Y  N T+   + K +  A+    KK+KK   N     
Sbjct: 537  GYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAEN----A 592

Query: 356  EDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKI 415
            E      G D G  LDE     +  +      K++H ++   I   T  P+  Q +A   
Sbjct: 593  EGQTPAIGPD-GEPLDETSQMSDLPV------KVIH-VESGKILTGTDAPKAGQLEAW-- 642

Query: 416  TELRPFNSWEALFTKMSKTNGLSEDL-----------------IWHCKTL-------IQE 451
             E+ P   +E      S+ +G  E+                  +   K +       + E
Sbjct: 643  LEMNP--GYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700

Query: 452  RDVVIRLMNKCEDISNKLTKQVTMLTGNGGGW--------NIEQPSILNQSLSLKPYQKV 503
             D    + N  +D+ ++      +  G    +         +++ S L  +  LK YQ  
Sbjct: 701  VDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIK 760

Query: 504  GLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPASTIDNWLR 562
            GL WL  ++ + LNGILADEMGLGKTIQ IA + YL +    NGP LI+VP ST+ NW  
Sbjct: 761  GLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAY 820

Query: 563  EVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKL 622
            E + W P++  + Y GS   R+   F    R   +NV++TTY   I    D+ +  +++ 
Sbjct: 821  EFDKWAPSVVKVSYKGSPAARR--AFVPQLRSGKFNVLLTTYEYIIK---DKHILAKIRW 875

Query: 623  NYAIFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSS 681
             Y I DEGH +KN      Q L T   A  RLLLTGTP+QN L EL +LLNF++P +F S
Sbjct: 876  KYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKS 935

Query: 682  STSEIRRMFSSKTKSADEQSIYEKER---IAHAKQIIKPFILRRVKEEVLKQLPPKKDRI 738
             ++  +   +    + ++  + E+E    I    ++++PF+LRR+K+EV  QLP K + +
Sbjct: 936  CSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYV 995

Query: 739  ELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTE-------MCNVMMQLRKMANHPLLHR 791
              C MS  Q  LY  +  + K  +    +EK+ +       + N +MQLRK+ NHP +  
Sbjct: 996  IKCDMSALQRVLYRHM--QAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYM-- 1051

Query: 792  QYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDL 851
                                         F+ +E    F  H+              +DL
Sbjct: 1052 -----------------------------FQHIE--ESFSEHL-----GFTGGIVQGLDL 1075

Query: 852  ILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISER 911
               SGKF +L  IL +L+    +V+LF Q T ++ I+E    +   +YLRLDG T+  +R
Sbjct: 1076 YRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDR 1135

Query: 912  IHLIDEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQ 970
              L+  FN    + F+FLLST+AGGLG+NL SA+ VI+ D D NP+ D QA+DR HR+GQ
Sbjct: 1136 GMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQ 1195

Query: 971  TKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGS 1013
              EV V++L +  ++EE +L   + KL ++Q +      D+ S
Sbjct: 1196 QNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKS 1238


>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a4 isoform E [Homo sapiens]
          Length = 1614

 Score =  305 bits (780), Expect = 2e-82
 Identities = 275/943 (29%), Positives = 428/943 (45%), Gaps = 120/943 (12%)

Query: 125  EPSEDEESQGLPTMARRNDDISELEDL--SELEDLKDAKLQTLKELFPQRSDNDLLKLIE 182
            +P E  + +     AR    I ELE+L  S   DL+      LK L        L + + 
Sbjct: 362  DPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVV 421

Query: 183  STSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSI---KKTRLDHGEES 239
                 D A+  AL          ++ K  S  E    ++    Q I   +K R  H E  
Sbjct: 422  VCMRRDTALETAL-----NAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYL 476

Query: 240  NESAESSSNWEKQESIVL----KLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAED 295
            N   + + ++++    V     KL K    +     RE  KE+E +  E +  L    E+
Sbjct: 477  NSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEE 536

Query: 296  QDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVV 355
               + + Q +      +  ++  Y  N T+   + K +  A+    KK+KK   N     
Sbjct: 537  GYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAEN----A 592

Query: 356  EDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKI 415
            E      G D G  LDE     +  +      K++H ++   I   T  P+  Q +A   
Sbjct: 593  EGQTPAIGPD-GEPLDETSQMSDLPV------KVIH-VESGKILTGTDAPKAGQLEAW-- 642

Query: 416  TELRPFNSWEALFTKMSKTNGLSEDL-----------------IWHCKTL-------IQE 451
             E+ P   +E      S+ +G  E+                  +   K +       + E
Sbjct: 643  LEMNP--GYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700

Query: 452  RDVVIRLMNKCEDISNKLTKQVTMLTGNGGGW--------NIEQPSILNQSLSLKPYQKV 503
             D    + N  +D+ ++      +  G    +         +++ S L  +  LK YQ  
Sbjct: 701  VDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIK 760

Query: 504  GLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPASTIDNWLR 562
            GL WL  ++ + LNGILADEMGLGKTIQ IA + YL +    NGP LI+VP ST+ NW  
Sbjct: 761  GLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAY 820

Query: 563  EVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKL 622
            E + W P++  + Y GS   R+   F    R   +NV++TTY   I    D+ +  +++ 
Sbjct: 821  EFDKWAPSVVKVSYKGSPAARR--AFVPQLRSGKFNVLLTTYEYIIK---DKHILAKIRW 875

Query: 623  NYAIFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSS 681
             Y I DEGH +KN      Q L T   A  RLLLTGTP+QN L EL +LLNF++P +F S
Sbjct: 876  KYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKS 935

Query: 682  STSEIRRMFSSKTKSADEQSIYEKER---IAHAKQIIKPFILRRVKEEVLKQLPPKKDRI 738
             ++  +   +    + ++  + E+E    I    ++++PF+LRR+K+EV  QLP K + +
Sbjct: 936  CSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYV 995

Query: 739  ELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTE-------MCNVMMQLRKMANHPLLHR 791
              C MS  Q  LY  +  + K  +    +EK+ +       + N +MQLRK+ NHP +  
Sbjct: 996  IKCDMSALQRVLYRHM--QAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYM-- 1051

Query: 792  QYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDL 851
                                         F+ +E    F  H+              +DL
Sbjct: 1052 -----------------------------FQHIE--ESFSEHL-----GFTGGIVQGLDL 1075

Query: 852  ILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISER 911
               SGKF +L  IL +L+    +V+LF Q T ++ I+E    +   +YLRLDG T+  +R
Sbjct: 1076 YRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDR 1135

Query: 912  IHLIDEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQ 970
              L+  FN    + F+FLLST+AGGLG+NL SA+ VI+ D D NP+ D QA+DR HR+GQ
Sbjct: 1136 GMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQ 1195

Query: 971  TKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGS 1013
              EV V++L +  ++EE +L   + KL ++Q +      D+ S
Sbjct: 1196 QNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKS 1238


>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a4 isoform D [Homo sapiens]
          Length = 1616

 Score =  305 bits (780), Expect = 2e-82
 Identities = 275/943 (29%), Positives = 428/943 (45%), Gaps = 120/943 (12%)

Query: 125  EPSEDEESQGLPTMARRNDDISELEDL--SELEDLKDAKLQTLKELFPQRSDNDLLKLIE 182
            +P E  + +     AR    I ELE+L  S   DL+      LK L        L + + 
Sbjct: 362  DPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVV 421

Query: 183  STSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSI---KKTRLDHGEES 239
                 D A+  AL          ++ K  S  E    ++    Q I   +K R  H E  
Sbjct: 422  VCMRRDTALETAL-----NAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYL 476

Query: 240  NESAESSSNWEKQESIVL----KLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAED 295
            N   + + ++++    V     KL K    +     RE  KE+E +  E +  L    E+
Sbjct: 477  NSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEE 536

Query: 296  QDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVV 355
               + + Q +      +  ++  Y  N T+   + K +  A+    KK+KK   N     
Sbjct: 537  GYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAEN----A 592

Query: 356  EDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKI 415
            E      G D G  LDE     +  +      K++H ++   I   T  P+  Q +A   
Sbjct: 593  EGQTPAIGPD-GEPLDETSQMSDLPV------KVIH-VESGKILTGTDAPKAGQLEAW-- 642

Query: 416  TELRPFNSWEALFTKMSKTNGLSEDL-----------------IWHCKTL-------IQE 451
             E+ P   +E      S+ +G  E+                  +   K +       + E
Sbjct: 643  LEMNP--GYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700

Query: 452  RDVVIRLMNKCEDISNKLTKQVTMLTGNGGGW--------NIEQPSILNQSLSLKPYQKV 503
             D    + N  +D+ ++      +  G    +         +++ S L  +  LK YQ  
Sbjct: 701  VDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIK 760

Query: 504  GLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPASTIDNWLR 562
            GL WL  ++ + LNGILADEMGLGKTIQ IA + YL +    NGP LI+VP ST+ NW  
Sbjct: 761  GLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAY 820

Query: 563  EVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKL 622
            E + W P++  + Y GS   R+   F    R   +NV++TTY   I    D+ +  +++ 
Sbjct: 821  EFDKWAPSVVKVSYKGSPAARR--AFVPQLRSGKFNVLLTTYEYIIK---DKHILAKIRW 875

Query: 623  NYAIFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSS 681
             Y I DEGH +KN      Q L T   A  RLLLTGTP+QN L EL +LLNF++P +F S
Sbjct: 876  KYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKS 935

Query: 682  STSEIRRMFSSKTKSADEQSIYEKER---IAHAKQIIKPFILRRVKEEVLKQLPPKKDRI 738
             ++  +   +    + ++  + E+E    I    ++++PF+LRR+K+EV  QLP K + +
Sbjct: 936  CSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYV 995

Query: 739  ELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTE-------MCNVMMQLRKMANHPLLHR 791
              C MS  Q  LY  +  + K  +    +EK+ +       + N +MQLRK+ NHP +  
Sbjct: 996  IKCDMSALQRVLYRHM--QAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYM-- 1051

Query: 792  QYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDL 851
                                         F+ +E    F  H+              +DL
Sbjct: 1052 -----------------------------FQHIE--ESFSEHL-----GFTGGIVQGLDL 1075

Query: 852  ILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISER 911
               SGKF +L  IL +L+    +V+LF Q T ++ I+E    +   +YLRLDG T+  +R
Sbjct: 1076 YRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDR 1135

Query: 912  IHLIDEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQ 970
              L+  FN    + F+FLLST+AGGLG+NL SA+ VI+ D D NP+ D QA+DR HR+GQ
Sbjct: 1136 GMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQ 1195

Query: 971  TKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGS 1013
              EV V++L +  ++EE +L   + KL ++Q +      D+ S
Sbjct: 1196 QNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKS 1238


>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a4 isoform C [Homo sapiens]
          Length = 1617

 Score =  305 bits (780), Expect = 2e-82
 Identities = 275/943 (29%), Positives = 428/943 (45%), Gaps = 120/943 (12%)

Query: 125  EPSEDEESQGLPTMARRNDDISELEDL--SELEDLKDAKLQTLKELFPQRSDNDLLKLIE 182
            +P E  + +     AR    I ELE+L  S   DL+      LK L        L + + 
Sbjct: 362  DPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVV 421

Query: 183  STSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSI---KKTRLDHGEES 239
                 D A+  AL          ++ K  S  E    ++    Q I   +K R  H E  
Sbjct: 422  VCMRRDTALETAL-----NAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYL 476

Query: 240  NESAESSSNWEKQESIVL----KLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAED 295
            N   + + ++++    V     KL K    +     RE  KE+E +  E +  L    E+
Sbjct: 477  NSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEE 536

Query: 296  QDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVV 355
               + + Q +      +  ++  Y  N T+   + K +  A+    KK+KK   N     
Sbjct: 537  GYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAEN----A 592

Query: 356  EDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKI 415
            E      G D G  LDE     +  +      K++H ++   I   T  P+  Q +A   
Sbjct: 593  EGQTPAIGPD-GEPLDETSQMSDLPV------KVIH-VESGKILTGTDAPKAGQLEAW-- 642

Query: 416  TELRPFNSWEALFTKMSKTNGLSEDL-----------------IWHCKTL-------IQE 451
             E+ P   +E      S+ +G  E+                  +   K +       + E
Sbjct: 643  LEMNP--GYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700

Query: 452  RDVVIRLMNKCEDISNKLTKQVTMLTGNGGGW--------NIEQPSILNQSLSLKPYQKV 503
             D    + N  +D+ ++      +  G    +         +++ S L  +  LK YQ  
Sbjct: 701  VDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIK 760

Query: 504  GLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPASTIDNWLR 562
            GL WL  ++ + LNGILADEMGLGKTIQ IA + YL +    NGP LI+VP ST+ NW  
Sbjct: 761  GLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAY 820

Query: 563  EVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKL 622
            E + W P++  + Y GS   R+   F    R   +NV++TTY   I    D+ +  +++ 
Sbjct: 821  EFDKWAPSVVKVSYKGSPAARR--AFVPQLRSGKFNVLLTTYEYIIK---DKHILAKIRW 875

Query: 623  NYAIFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSS 681
             Y I DEGH +KN      Q L T   A  RLLLTGTP+QN L EL +LLNF++P +F S
Sbjct: 876  KYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKS 935

Query: 682  STSEIRRMFSSKTKSADEQSIYEKER---IAHAKQIIKPFILRRVKEEVLKQLPPKKDRI 738
             ++  +   +    + ++  + E+E    I    ++++PF+LRR+K+EV  QLP K + +
Sbjct: 936  CSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYV 995

Query: 739  ELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTE-------MCNVMMQLRKMANHPLLHR 791
              C MS  Q  LY  +  + K  +    +EK+ +       + N +MQLRK+ NHP +  
Sbjct: 996  IKCDMSALQRVLYRHM--QAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYM-- 1051

Query: 792  QYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDL 851
                                         F+ +E    F  H+              +DL
Sbjct: 1052 -----------------------------FQHIE--ESFSEHL-----GFTGGIVQGLDL 1075

Query: 852  ILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISER 911
               SGKF +L  IL +L+    +V+LF Q T ++ I+E    +   +YLRLDG T+  +R
Sbjct: 1076 YRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDR 1135

Query: 912  IHLIDEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQ 970
              L+  FN    + F+FLLST+AGGLG+NL SA+ VI+ D D NP+ D QA+DR HR+GQ
Sbjct: 1136 GMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQ 1195

Query: 971  TKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGS 1013
              EV V++L +  ++EE +L   + KL ++Q +      D+ S
Sbjct: 1196 QNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKS 1238


>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a4 isoform B [Homo sapiens]
          Length = 1647

 Score =  305 bits (780), Expect = 2e-82
 Identities = 275/943 (29%), Positives = 428/943 (45%), Gaps = 120/943 (12%)

Query: 125  EPSEDEESQGLPTMARRNDDISELEDL--SELEDLKDAKLQTLKELFPQRSDNDLLKLIE 182
            +P E  + +     AR    I ELE+L  S   DL+      LK L        L + + 
Sbjct: 362  DPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVV 421

Query: 183  STSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSI---KKTRLDHGEES 239
                 D A+  AL          ++ K  S  E    ++    Q I   +K R  H E  
Sbjct: 422  VCMRRDTALETAL-----NAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYL 476

Query: 240  NESAESSSNWEKQESIVL----KLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAED 295
            N   + + ++++    V     KL K    +     RE  KE+E +  E +  L    E+
Sbjct: 477  NSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEE 536

Query: 296  QDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVV 355
               + + Q +      +  ++  Y  N T+   + K +  A+    KK+KK   N     
Sbjct: 537  GYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAEN----A 592

Query: 356  EDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKI 415
            E      G D G  LDE     +  +      K++H ++   I   T  P+  Q +A   
Sbjct: 593  EGQTPAIGPD-GEPLDETSQMSDLPV------KVIH-VESGKILTGTDAPKAGQLEAW-- 642

Query: 416  TELRPFNSWEALFTKMSKTNGLSEDL-----------------IWHCKTL-------IQE 451
             E+ P   +E      S+ +G  E+                  +   K +       + E
Sbjct: 643  LEMNP--GYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700

Query: 452  RDVVIRLMNKCEDISNKLTKQVTMLTGNGGGW--------NIEQPSILNQSLSLKPYQKV 503
             D    + N  +D+ ++      +  G    +         +++ S L  +  LK YQ  
Sbjct: 701  VDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIK 760

Query: 504  GLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPASTIDNWLR 562
            GL WL  ++ + LNGILADEMGLGKTIQ IA + YL +    NGP LI+VP ST+ NW  
Sbjct: 761  GLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAY 820

Query: 563  EVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKL 622
            E + W P++  + Y GS   R+   F    R   +NV++TTY   I    D+ +  +++ 
Sbjct: 821  EFDKWAPSVVKVSYKGSPAARR--AFVPQLRSGKFNVLLTTYEYIIK---DKHILAKIRW 875

Query: 623  NYAIFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSS 681
             Y I DEGH +KN      Q L T   A  RLLLTGTP+QN L EL +LLNF++P +F S
Sbjct: 876  KYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKS 935

Query: 682  STSEIRRMFSSKTKSADEQSIYEKER---IAHAKQIIKPFILRRVKEEVLKQLPPKKDRI 738
             ++  +   +    + ++  + E+E    I    ++++PF+LRR+K+EV  QLP K + +
Sbjct: 936  CSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYV 995

Query: 739  ELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTE-------MCNVMMQLRKMANHPLLHR 791
              C MS  Q  LY  +  + K  +    +EK+ +       + N +MQLRK+ NHP +  
Sbjct: 996  IKCDMSALQRVLYRHM--QAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYM-- 1051

Query: 792  QYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDL 851
                                         F+ +E    F  H+              +DL
Sbjct: 1052 -----------------------------FQHIE--ESFSEHL-----GFTGGIVQGLDL 1075

Query: 852  ILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISER 911
               SGKF +L  IL +L+    +V+LF Q T ++ I+E    +   +YLRLDG T+  +R
Sbjct: 1076 YRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDR 1135

Query: 912  IHLIDEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQ 970
              L+  FN    + F+FLLST+AGGLG+NL SA+ VI+ D D NP+ D QA+DR HR+GQ
Sbjct: 1136 GMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQ 1195

Query: 971  TKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGS 1013
              EV V++L +  ++EE +L   + KL ++Q +      D+ S
Sbjct: 1196 QNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKS 1238


>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a4 isoform B [Homo sapiens]
          Length = 1647

 Score =  305 bits (780), Expect = 2e-82
 Identities = 275/943 (29%), Positives = 428/943 (45%), Gaps = 120/943 (12%)

Query: 125  EPSEDEESQGLPTMARRNDDISELEDL--SELEDLKDAKLQTLKELFPQRSDNDLLKLIE 182
            +P E  + +     AR    I ELE+L  S   DL+      LK L        L + + 
Sbjct: 362  DPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVV 421

Query: 183  STSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSI---KKTRLDHGEES 239
                 D A+  AL          ++ K  S  E    ++    Q I   +K R  H E  
Sbjct: 422  VCMRRDTALETAL-----NAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYL 476

Query: 240  NESAESSSNWEKQESIVL----KLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAED 295
            N   + + ++++    V     KL K    +     RE  KE+E +  E +  L    E+
Sbjct: 477  NSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEE 536

Query: 296  QDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVV 355
               + + Q +      +  ++  Y  N T+   + K +  A+    KK+KK   N     
Sbjct: 537  GYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAEN----A 592

Query: 356  EDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKI 415
            E      G D G  LDE     +  +      K++H ++   I   T  P+  Q +A   
Sbjct: 593  EGQTPAIGPD-GEPLDETSQMSDLPV------KVIH-VESGKILTGTDAPKAGQLEAW-- 642

Query: 416  TELRPFNSWEALFTKMSKTNGLSEDL-----------------IWHCKTL-------IQE 451
             E+ P   +E      S+ +G  E+                  +   K +       + E
Sbjct: 643  LEMNP--GYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700

Query: 452  RDVVIRLMNKCEDISNKLTKQVTMLTGNGGGW--------NIEQPSILNQSLSLKPYQKV 503
             D    + N  +D+ ++      +  G    +         +++ S L  +  LK YQ  
Sbjct: 701  VDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIK 760

Query: 504  GLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPASTIDNWLR 562
            GL WL  ++ + LNGILADEMGLGKTIQ IA + YL +    NGP LI+VP ST+ NW  
Sbjct: 761  GLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAY 820

Query: 563  EVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKL 622
            E + W P++  + Y GS   R+   F    R   +NV++TTY   I    D+ +  +++ 
Sbjct: 821  EFDKWAPSVVKVSYKGSPAARR--AFVPQLRSGKFNVLLTTYEYIIK---DKHILAKIRW 875

Query: 623  NYAIFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSS 681
             Y I DEGH +KN      Q L T   A  RLLLTGTP+QN L EL +LLNF++P +F S
Sbjct: 876  KYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKS 935

Query: 682  STSEIRRMFSSKTKSADEQSIYEKER---IAHAKQIIKPFILRRVKEEVLKQLPPKKDRI 738
             ++  +   +    + ++  + E+E    I    ++++PF+LRR+K+EV  QLP K + +
Sbjct: 936  CSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYV 995

Query: 739  ELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTE-------MCNVMMQLRKMANHPLLHR 791
              C MS  Q  LY  +  + K  +    +EK+ +       + N +MQLRK+ NHP +  
Sbjct: 996  IKCDMSALQRVLYRHM--QAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYM-- 1051

Query: 792  QYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDL 851
                                         F+ +E    F  H+              +DL
Sbjct: 1052 -----------------------------FQHIE--ESFSEHL-----GFTGGIVQGLDL 1075

Query: 852  ILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISER 911
               SGKF +L  IL +L+    +V+LF Q T ++ I+E    +   +YLRLDG T+  +R
Sbjct: 1076 YRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDR 1135

Query: 912  IHLIDEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQ 970
              L+  FN    + F+FLLST+AGGLG+NL SA+ VI+ D D NP+ D QA+DR HR+GQ
Sbjct: 1136 GMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQ 1195

Query: 971  TKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGS 1013
              EV V++L +  ++EE +L   + KL ++Q +      D+ S
Sbjct: 1196 QNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKS 1238


>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a2 isoform a [Homo sapiens]
          Length = 1590

 Score =  301 bits (772), Expect = 2e-81
 Identities = 267/941 (28%), Positives = 433/941 (46%), Gaps = 122/941 (12%)

Query: 125  EPSEDEESQGLPTMARRNDDISELEDL--SELEDLKDAKLQTLKEL----FPQRSDNDLL 178
            +P E  + +     AR    I ELE+L  S   DL+      LK L    F ++   +++
Sbjct: 338  DPVEILQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVV 397

Query: 179  KLIESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSI---KKTRLDH 235
              +   +T++ A+ +            ++ K  +  E    ++    Q I   +K R  H
Sbjct: 398  ACMRRDTTLETALNSKAY---------KRSKRQTLREARMTEKLEKQQKIEQERKRRQKH 448

Query: 236  GEESNESAESSSNWEKQESIVL----KLQKEFPNFDKQELREVLKEHEWMYTEALESLKV 291
             E  N   + + ++++    V     KL K    +     RE  KE E +  E +  L  
Sbjct: 449  QEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMA 508

Query: 292  FAEDQDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNP 351
              E+   + + Q +      +  ++  Y  N T    + K +  A+    ++R+K     
Sbjct: 509  EDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRK----- 563

Query: 352  KRVVEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKK 411
            K+  E++E   G +  S+L  D   GE + E      +   +     G++   P+    K
Sbjct: 564  KKAEENAE---GGE--SALGPD---GEPIDESSQMSDLPVKVTHTETGKVLFGPEAP--K 613

Query: 412  AQKITELRPFNSWEALFTKMSKTNGLS--EDLIWHCKTLIQERDVVIRLMNKCEDISNKL 469
            A ++      N    +  +       S  E+     ++  QE +  I L    E++S K 
Sbjct: 614  ASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKD 673

Query: 470  TKQV------------TMLTGNGGGWN-----------IEQPSILNQSLSLKPYQKVGLN 506
             KQ+            +M     G  +           +E+ S L  + +LK YQ  GL 
Sbjct: 674  AKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLE 733

Query: 507  WLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPASTIDNWLREVN 565
            W+  ++ + LNGILADEMGLGKTIQ IA + YL +    NGP+LI+VP ST+ NW  E +
Sbjct: 734  WMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFD 793

Query: 566  LWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKLNYA 625
             W P++  + Y G+   R+ +   + S    +NV++TTY   I    D+ +  +++  Y 
Sbjct: 794  KWAPSVVKISYKGTPAMRRSLVPQLRS--GKFNVLLTTYEYIIK---DKHILAKIRWKYM 848

Query: 626  IFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTS 684
            I DEGH +KN      Q L T   A  R+LLTGTP+QN L EL +LLNF++P +F  S S
Sbjct: 849  IVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIF-KSCS 907

Query: 685  EIRRMFSSKTKSADEQSIYEKER----IAHAKQIIKPFILRRVKEEVLKQLPPKKDRIEL 740
               + F++      E+    +E     I    ++++PF+LRR+K+EV  QLP K + +  
Sbjct: 908  TFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIK 967

Query: 741  CAMSEKQEQLYLGLFNRLKKSINNLVTEKNTE-------MCNVMMQLRKMANHPLLHRQY 793
            C MS  Q+ LY  +  + K  +    +EK+ +       + N +MQLRK+ NHP + +  
Sbjct: 968  CDMSALQKILYRHM--QAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQ-- 1023

Query: 794  YTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLIL 853
                              H E +                    +   + N      +L  
Sbjct: 1024 ------------------HIEES------------------FAEHLGYSNGVINGAELYR 1047

Query: 854  DSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIH 913
             SGKF +L  IL +L+    RV+LF Q T ++ I+E         YLRLDG T+  +R  
Sbjct: 1048 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1107

Query: 914  LIDEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTK 972
            L+ +FN      F+FLLST+AGGLG+NL +A+ V++ D D NP+ D QA+DR HR+GQ  
Sbjct: 1108 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQN 1167

Query: 973  EVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGS 1013
            EV V++L +  ++EE +L   + KL ++Q +      D+ S
Sbjct: 1168 EVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKS 1208


>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a2 isoform b [Homo sapiens]
          Length = 1572

 Score =  301 bits (772), Expect = 2e-81
 Identities = 267/941 (28%), Positives = 433/941 (46%), Gaps = 122/941 (12%)

Query: 125  EPSEDEESQGLPTMARRNDDISELEDL--SELEDLKDAKLQTLKEL----FPQRSDNDLL 178
            +P E  + +     AR    I ELE+L  S   DL+      LK L    F ++   +++
Sbjct: 338  DPVEILQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVV 397

Query: 179  KLIESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSI---KKTRLDH 235
              +   +T++ A+ +            ++ K  +  E    ++    Q I   +K R  H
Sbjct: 398  ACMRRDTTLETALNSKAY---------KRSKRQTLREARMTEKLEKQQKIEQERKRRQKH 448

Query: 236  GEESNESAESSSNWEKQESIVL----KLQKEFPNFDKQELREVLKEHEWMYTEALESLKV 291
             E  N   + + ++++    V     KL K    +     RE  KE E +  E +  L  
Sbjct: 449  QEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMA 508

Query: 292  FAEDQDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNP 351
              E+   + + Q +      +  ++  Y  N T    + K +  A+    ++R+K     
Sbjct: 509  EDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRK----- 563

Query: 352  KRVVEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKK 411
            K+  E++E   G +  S+L  D   GE + E      +   +     G++   P+    K
Sbjct: 564  KKAEENAE---GGE--SALGPD---GEPIDESSQMSDLPVKVTHTETGKVLFGPEAP--K 613

Query: 412  AQKITELRPFNSWEALFTKMSKTNGLS--EDLIWHCKTLIQERDVVIRLMNKCEDISNKL 469
            A ++      N    +  +       S  E+     ++  QE +  I L    E++S K 
Sbjct: 614  ASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKD 673

Query: 470  TKQV------------TMLTGNGGGWN-----------IEQPSILNQSLSLKPYQKVGLN 506
             KQ+            +M     G  +           +E+ S L  + +LK YQ  GL 
Sbjct: 674  AKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLE 733

Query: 507  WLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPASTIDNWLREVN 565
            W+  ++ + LNGILADEMGLGKTIQ IA + YL +    NGP+LI+VP ST+ NW  E +
Sbjct: 734  WMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFD 793

Query: 566  LWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKLNYA 625
             W P++  + Y G+   R+ +   + S    +NV++TTY   I    D+ +  +++  Y 
Sbjct: 794  KWAPSVVKISYKGTPAMRRSLVPQLRS--GKFNVLLTTYEYIIK---DKHILAKIRWKYM 848

Query: 626  IFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTS 684
            I DEGH +KN      Q L T   A  R+LLTGTP+QN L EL +LLNF++P +F  S S
Sbjct: 849  IVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIF-KSCS 907

Query: 685  EIRRMFSSKTKSADEQSIYEKER----IAHAKQIIKPFILRRVKEEVLKQLPPKKDRIEL 740
               + F++      E+    +E     I    ++++PF+LRR+K+EV  QLP K + +  
Sbjct: 908  TFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIK 967

Query: 741  CAMSEKQEQLYLGLFNRLKKSINNLVTEKNTE-------MCNVMMQLRKMANHPLLHRQY 793
            C MS  Q+ LY  +  + K  +    +EK+ +       + N +MQLRK+ NHP + +  
Sbjct: 968  CDMSALQKILYRHM--QAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQ-- 1023

Query: 794  YTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLIL 853
                              H E +                    +   + N      +L  
Sbjct: 1024 ------------------HIEES------------------FAEHLGYSNGVINGAELYR 1047

Query: 854  DSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIH 913
             SGKF +L  IL +L+    RV+LF Q T ++ I+E         YLRLDG T+  +R  
Sbjct: 1048 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1107

Query: 914  LIDEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTK 972
            L+ +FN      F+FLLST+AGGLG+NL +A+ V++ D D NP+ D QA+DR HR+GQ  
Sbjct: 1108 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQN 1167

Query: 973  EVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGS 1013
            EV V++L +  ++EE +L   + KL ++Q +      D+ S
Sbjct: 1168 EVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKS 1208


>gi|68299795 chromodomain helicase DNA binding protein 1 [Homo
            sapiens]
          Length = 1710

 Score =  298 bits (763), Expect = 2e-80
 Identities = 190/523 (36%), Positives = 282/523 (53%), Gaps = 65/523 (12%)

Query: 486  EQPSIL--NQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEG 543
            +QPS +  ++ L L+ YQ  GLNWLA     G + ILADEMGLGKTIQ I+FL YL+ E 
Sbjct: 468  KQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEH 527

Query: 544  N-NGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYED----YN 598
               GP L+VVP ST+ +W RE+  W   +  + Y G    R  IR +  + ++     +N
Sbjct: 528  QLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWTHHQTKRLKFN 587

Query: 599  VIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGT 658
            +++TTY   +    D++    L   +   DE H LKN  S+ Y+ L+   +N+RLL+TGT
Sbjct: 588  ILLTTYEILLK---DKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGT 644

Query: 659  PVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPF 718
            P+QN+L EL SLL+F+MP  FSS                +E     +   A   + ++PF
Sbjct: 645  PLQNSLKELWSLLHFIMPEKFSSWED-----------FEEEHGKGREYGYASLHKELEPF 693

Query: 719  ILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMM 778
            +LRRVK++V K LP K ++I    MS  Q+Q Y  +  R  K+++       +   N+MM
Sbjct: 694  LLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMM 753

Query: 779  QLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQ 838
            +L+K  NH  L                 +K P + E                        
Sbjct: 754  ELKKCCNHCYL-----------------IKPPDNNE------------------------ 772

Query: 839  YRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHR 898
                N  +    LI  SGK  +L  +L  L+++G+RV++FSQ   MLDIL   LK+ Q  
Sbjct: 773  --FYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFP 830

Query: 899  YLRLDGKTQISERIHLIDEFNTD-MDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYN 957
            + RLDG  +   R   +D FN +  + F FLLST+AGGLGINL SA+ V++ D D NP N
Sbjct: 831  FQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQN 890

Query: 958  DKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLE 1000
            D QA+ R HR+GQ K+V + +L+++G++EE +L+  ++K+ L+
Sbjct: 891  DLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLD 933


>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
            [Homo sapiens]
          Length = 1828

 Score =  298 bits (762), Expect = 2e-80
 Identities = 191/522 (36%), Positives = 286/522 (54%), Gaps = 64/522 (12%)

Query: 486  EQPSILN-QSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN 544
            +QP+ L  ++L L+ YQ  GLNWLA       + ILADEMGLGKTIQ I+FL+YL+ +  
Sbjct: 472  KQPAYLGGENLELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHQHQ 531

Query: 545  -NGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFN--IHSRYE--DYNV 599
              GP LIVVP ST+ +W RE  +W P + V+ Y G    R  IR    IHS+ +   +N 
Sbjct: 532  LYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNA 591

Query: 600  IVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTP 659
            ++TTY   +    D+++   +   +   DE H LKN  S+ Y+ L+   +N+RLL+TGTP
Sbjct: 592  LITTYEILLK---DKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTP 648

Query: 660  VQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFI 719
            +QN+L EL SLL+F+MP  F     E       K +    QS++         ++++PF+
Sbjct: 649  LQNSLKELWSLLHFIMPEKF--EFWEDFEEDHGKGRENGYQSLH---------KVLEPFL 697

Query: 720  LRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQ 779
            LRRVK++V K LP K ++I    MS  Q+Q Y  +  R  K++        +   N++M+
Sbjct: 698  LRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTSGFLNIVME 757

Query: 780  LRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQY 839
            L+K  NH  L                 +K P   E                         
Sbjct: 758  LKKCCNHCYL-----------------IKPPEENERE----------------------- 777

Query: 840  RHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRY 899
               N  ++ + LI  SGK  +L  +L+ L+++G+RV++FSQ   MLDIL   L    + +
Sbjct: 778  ---NGQEILLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPF 834

Query: 900  LRLDGKTQISERIHLIDEFNTD-MDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYND 958
             RLDG  +   R   +D FN D  + F FLLST+AGGLGINL SA+ V++ D D NP ND
Sbjct: 835  QRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQND 894

Query: 959  KQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLE 1000
             QA+ R HR+GQ K+V + +L+++GT+EE +++  ++K+ L+
Sbjct: 895  LQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLD 936



 Score = 33.1 bits (74), Expect = 1.4
 Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 21/136 (15%)

Query: 211 SSSSEPYEEDEFNDDQSIKKTRLDHGEESNESAESSSNWEKQES--------IVLKLQKE 262
           S S    E ++ +D  S       HG ESN S+ESS +  + ES         VL   KE
Sbjct: 31  SDSGSQSESEQGSDPGS------GHGSESNSSSESSESQSESESESAGSKSQPVLPEAKE 84

Query: 263 FPNFDKQELREVLKEHEWMYTEALESLKVFAEDQDMQYVSQSEVPNGKEVSSRSQN-YPK 321
            P   K+ + +V K    M+ E  +   V   ++  Q  S+  +   +E SS S++  PK
Sbjct: 85  KPASKKERIADVKK----MWEEYPDVYGVRRSNRSRQEPSRFNIK--EEASSGSESGSPK 138

Query: 322 NATKTKLKQKFSMKAQ 337
              + +LK++   K +
Sbjct: 139 RRGQRQLKKQEKWKQE 154


>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
            sapiens]
          Length = 2997

 Score =  277 bits (708), Expect = 4e-74
 Identities = 189/530 (35%), Positives = 279/530 (52%), Gaps = 62/530 (11%)

Query: 497  LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNNGPHLIVVPAST 556
            L+ YQ  G+NWL     +  N ILADEMGLGKTIQ+I FL  +Y +G +GP L++ P ST
Sbjct: 968  LREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFLYEIYLKGIHGPFLVIAPLST 1027

Query: 557  IDNWLREVNLWCPTLKVLCYYGSQEERKQIRFN-----------IHSRYEDYNVIVTTYN 605
            I NW RE   W   L V+ Y+GSQ  R+ I+             I   Y+ ++ I+TT+ 
Sbjct: 1028 IPNWEREFRTWTE-LNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYK-FHAIITTFE 1085

Query: 606  CAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLL 665
              ++   +    R +     + DE H LKN      + L  ++  +++LLTGTP+QN + 
Sbjct: 1086 MILTDCPE---LRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVE 1142

Query: 666  ELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKE 725
            EL SLL+F+ P  F S T+ ++     KT+          E++   + I+KP +LRR+KE
Sbjct: 1143 ELFSLLHFLEPSRFPSETTFMQEFGDLKTE----------EQVQKLQAILKPMMLRRLKE 1192

Query: 726  EVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNT-EMCNVMMQLRKMA 784
            +V K L PK++ I    ++  Q++ Y  +  +    ++    + N   + N MM+LRK  
Sbjct: 1193 DVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCC 1252

Query: 785  NHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINN 844
            NHP L       EK+ E      KE TH   +PD                          
Sbjct: 1253 NHPYLING--AEEKILEE----FKE-THNAESPD-------------------------- 1279

Query: 845  FQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDG 904
            FQL   +I  +GK  ++  +L +LK  G RV++FSQ    LDILE  L   ++ Y R+DG
Sbjct: 1280 FQLQA-MIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDG 1338

Query: 905  KTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAED 963
            + + + R   ID F+  D D FVFLL T+AGGLGINLT+A+  I+ D D NP ND QA+ 
Sbjct: 1339 RVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQA 1398

Query: 964  RCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGS 1013
            RCHR+GQ+K V + +LI++ + E  M      KL L++ +     G E +
Sbjct: 1399 RCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENA 1448


>gi|51599156 chromodomain helicase DNA binding protein 4 [Homo
            sapiens]
          Length = 1912

 Score =  274 bits (701), Expect = 3e-73
 Identities = 180/525 (34%), Positives = 266/525 (50%), Gaps = 76/525 (14%)

Query: 496  SLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNN-GPHLIVVPA 554
            +L PYQ  GLNWL      G + ILADEMGLGKT+Q   FL  LY+EG++ GP L+  P 
Sbjct: 725  TLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPL 784

Query: 555  STIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYED------------------ 596
            STI NW RE  +W P + V+ Y G ++ R  IR N  S +ED                  
Sbjct: 785  STIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFS-FEDNAIRGGKKASRMKKEASV 843

Query: 597  -YNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLL 655
             ++V++T+Y      + D ++   +     I DE H LKN  S  ++ L   +  ++LLL
Sbjct: 844  KFHVLLTSYELI---TIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLL 900

Query: 656  TGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQII 715
            TGTP+QNNL EL  LLNF+ P  F +    +               I ++++I     ++
Sbjct: 901  TGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF----------ADIAKEDQIKKLHDML 950

Query: 716  KPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCN 775
             P +LRR+K +V K +P K + I    +S  Q++ Y  +  R  +++N         + N
Sbjct: 951  GPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQVSLLN 1010

Query: 776  VMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVL 835
            V+M L+K  NHP L                    P      P +                
Sbjct: 1011 VVMDLKKCCNHPYLF-------------------PVAAMEAPKM---------------- 1035

Query: 836  CKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHH 895
                   N       LI  SGK  +L  +L  LK+ G RV++FSQ T MLD+LE  L+H 
Sbjct: 1036 ------PNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHE 1089

Query: 896  QHRYLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCN 954
             ++Y R+DG    + R   ID FN      F FLLST+AGGLGINL +A+ VI++D D N
Sbjct: 1090 GYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWN 1149

Query: 955  PYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKL 999
            P+ND QA  R HR+GQ K+V++ + +++ ++EE + ++ ++K+ L
Sbjct: 1150 PHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMML 1194


>gi|114326455 chromodomain helicase DNA binding protein 8 [Homo
            sapiens]
          Length = 2302

 Score =  273 bits (698), Expect = 6e-73
 Identities = 182/535 (34%), Positives = 273/535 (51%), Gaps = 70/535 (13%)

Query: 497  LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNNGPHLIVVPAST 556
            L+ YQ  G+NWL     +  N ILADEMGLGKTIQ+IAFL  +Y  G +GP L++ P ST
Sbjct: 532  LREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYNVGIHGPFLVIAPLST 591

Query: 557  IDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDY---------------NVIV 601
            I NW RE N W   +  + Y+GS   R+ I+     +YE Y               + ++
Sbjct: 592  ITNWEREFNTWTE-MNTIVYHGSLASRQMIQ-----QYEMYCKDSRGRLIPGAYKFDALI 645

Query: 602  TTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQ 661
            TT+   +S   +    R ++    I DE H LKN        L  ++  +++LLTGTP+Q
Sbjct: 646  TTFEMILSDCPE---LREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQ 702

Query: 662  NNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILR 721
            N + EL SLL+F+ P  F S +  ++     KT+          E++   + I+KP +LR
Sbjct: 703  NTVEELFSLLHFLEPSQFPSESEFLKDFGDLKTE----------EQVQKLQAILKPMMLR 752

Query: 722  RVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNT-EMCNVMMQL 780
            R+KE+V K L PK++ I    ++  Q++ Y  +  +    ++      N   + N MM+L
Sbjct: 753  RLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGAGHTNMPNLLNTMMEL 812

Query: 781  RKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYR 840
            RK  NHP      Y     +E      +E  H             +  DF L  + +   
Sbjct: 813  RKCCNHP------YLINGAEEKILTEFREACHI------------IPHDFHLQAMVRS-- 852

Query: 841  HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL 900
                          +GK  ++  +L +LK  G +V++FSQ    LDILE  L   ++ Y 
Sbjct: 853  --------------AGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYE 898

Query: 901  RLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDK 959
            R+DG+ + + R   ID F+  D D FVFLL T+AGGLGINLT+A+  I+ D D NP ND 
Sbjct: 899  RIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDL 958

Query: 960  QAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSM 1014
            QA+ RCHR+GQ+K V V +LI++ + E  M      KL L++ +     G +G++
Sbjct: 959  QAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRDGNI 1013


>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
            sapiens]
          Length = 2715

 Score =  273 bits (698), Expect = 6e-73
 Identities = 184/530 (34%), Positives = 274/530 (51%), Gaps = 62/530 (11%)

Query: 485  IEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN 544
            +E+      S  L+ YQ  G+NWL     +  N ILADEMGLGKTIQ+I FL+ ++  G 
Sbjct: 449  LEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFLRGI 508

Query: 545  NGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYED-------- 596
            +GP LI+ P STI NW RE   W   +  + Y+GSQ  R+ I+      Y D        
Sbjct: 509  HGPFLIIAPLSTITNWEREFRTWTE-MNAIVYHGSQISRQMIQ-QYEMVYRDAQGNPLSG 566

Query: 597  ---YNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRL 653
               ++V++TT+   ++   +    +++  +  I DE H LKN      + L  +   +++
Sbjct: 567  VFKFHVVITTFEMILADCPE---LKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKV 623

Query: 654  LLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQ 713
            LLTGTP+QN++ EL SLLNF+ P  F S T+ +      KT+          E++   + 
Sbjct: 624  LLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFGDLKTE----------EQVKKLQS 673

Query: 714  IIKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNT-E 772
            I+KP +LRR+K++V K L PK++ I    ++  Q++ Y  +  +    +     + N   
Sbjct: 674  ILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLTKGANQHNMPN 733

Query: 773  MCNVMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFEL 832
            + N MM+LRK  NHP L       EK+ E  +      TH    PD              
Sbjct: 734  LINTMMELRKCCNHPYLING--AEEKILEDFR-----KTHSPDAPD-------------- 772

Query: 833  HVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLL 892
                        FQL   +I  +GK  ++  +L +L   G +V++FSQ    LDILE  L
Sbjct: 773  ------------FQLQA-MIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYL 819

Query: 893  KHHQHRYLRLDGKTQISERIHLIDEF-NTDMDIFVFLLSTKAGGLGINLTSANVVILHDI 951
               ++ Y R+DG+ + + R   ID F   D D FVFLL T+AGGLGINLT+A+  I+ D 
Sbjct: 820  IQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDS 879

Query: 952  DCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQ 1001
            D NP ND QA+ RCHR+GQ+K V V +LI++ + E  M      KL L++
Sbjct: 880  DWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDK 929


>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
            [Homo sapiens]
          Length = 2000

 Score =  271 bits (692), Expect = 3e-72
 Identities = 179/525 (34%), Positives = 267/525 (50%), Gaps = 76/525 (14%)

Query: 496  SLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPA 554
            +L  YQ  GLNWL      G + ILADEMGLGKTIQ I FL  LY+EG+  GP L+  P 
Sbjct: 735  TLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPL 794

Query: 555  STIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYED------------------ 596
            STI NW RE  +W P   V+ Y G ++ R  IR N  S +ED                  
Sbjct: 795  STIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFS-FEDNAIKGGKKAFKMKREAQV 853

Query: 597  -YNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLL 655
             ++V++T+Y      + D++    ++    + DE H LKN  S  ++ L     +++LLL
Sbjct: 854  KFHVLLTSYELI---TIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLL 910

Query: 656  TGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQII 715
            TGTP+QNNL EL  LLNF+ P  F++    +               I ++++I     ++
Sbjct: 911  TGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQIKKLHDLL 960

Query: 716  KPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCN 775
             P +LRR+K +V K +P K + I    +S  Q++ Y  +  R  +++N+        + N
Sbjct: 961  GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN 1020

Query: 776  VMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVL 835
            +MM L+K  NHP L                    P     +P L     E          
Sbjct: 1021 IMMDLKKCCNHPYLF-------------------PVAAMESPKLPSGAYE---------- 1051

Query: 836  CKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHH 895
                           LI  SGK  +L  +L +LK++G RV++FSQ T MLD+LE  L + 
Sbjct: 1052 ------------GGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYE 1099

Query: 896  QHRYLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCN 954
             ++Y R+DG    + R   ID FN      F FLLST+AGGLGINL +A+ VI+ D D N
Sbjct: 1100 GYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWN 1159

Query: 955  PYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKL 999
            P+ND QA  R HR+GQ  +V++ + +++ ++EE + ++ ++K+ L
Sbjct: 1160 PHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1204


>gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2
            [Homo sapiens]
          Length = 1966

 Score =  271 bits (692), Expect = 3e-72
 Identities = 179/525 (34%), Positives = 267/525 (50%), Gaps = 76/525 (14%)

Query: 496  SLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPA 554
            +L  YQ  GLNWL      G + ILADEMGLGKTIQ I FL  LY+EG+  GP L+  P 
Sbjct: 735  TLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPL 794

Query: 555  STIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYED------------------ 596
            STI NW RE  +W P   V+ Y G ++ R  IR N  S +ED                  
Sbjct: 795  STIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFS-FEDNAIKGGKKAFKMKREAQV 853

Query: 597  -YNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLL 655
             ++V++T+Y      + D++    ++    + DE H LKN  S  ++ L     +++LLL
Sbjct: 854  KFHVLLTSYELI---TIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLL 910

Query: 656  TGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQII 715
            TGTP+QNNL EL  LLNF+ P  F++    +               I ++++I     ++
Sbjct: 911  TGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQIKKLHDLL 960

Query: 716  KPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCN 775
             P +LRR+K +V K +P K + I    +S  Q++ Y  +  R  +++N+        + N
Sbjct: 961  GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN 1020

Query: 776  VMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVL 835
            +MM L+K  NHP L                    P     +P L     E          
Sbjct: 1021 IMMDLKKCCNHPYLF-------------------PVAAMESPKLPSGAYE---------- 1051

Query: 836  CKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHH 895
                           LI  SGK  +L  +L +LK++G RV++FSQ T MLD+LE  L + 
Sbjct: 1052 ------------GGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYE 1099

Query: 896  QHRYLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCN 954
             ++Y R+DG    + R   ID FN      F FLLST+AGGLGINL +A+ VI+ D D N
Sbjct: 1100 GYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWN 1159

Query: 955  PYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKL 999
            P+ND QA  R HR+GQ  +V++ + +++ ++EE + ++ ++K+ L
Sbjct: 1160 PHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1204


>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
            [Homo sapiens]
          Length = 2059

 Score =  271 bits (692), Expect = 3e-72
 Identities = 179/525 (34%), Positives = 267/525 (50%), Gaps = 76/525 (14%)

Query: 496  SLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPA 554
            +L  YQ  GLNWL      G + ILADEMGLGKTIQ I FL  LY+EG+  GP L+  P 
Sbjct: 794  TLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPL 853

Query: 555  STIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYED------------------ 596
            STI NW RE  +W P   V+ Y G ++ R  IR N  S +ED                  
Sbjct: 854  STIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFS-FEDNAIKGGKKAFKMKREAQV 912

Query: 597  -YNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLL 655
             ++V++T+Y      + D++    ++    + DE H LKN  S  ++ L     +++LLL
Sbjct: 913  KFHVLLTSYELI---TIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLL 969

Query: 656  TGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQII 715
            TGTP+QNNL EL  LLNF+ P  F++    +               I ++++I     ++
Sbjct: 970  TGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQIKKLHDLL 1019

Query: 716  KPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCN 775
             P +LRR+K +V K +P K + I    +S  Q++ Y  +  R  +++N+        + N
Sbjct: 1020 GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN 1079

Query: 776  VMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVL 835
            +MM L+K  NHP L                    P     +P L     E          
Sbjct: 1080 IMMDLKKCCNHPYLF-------------------PVAAMESPKLPSGAYE---------- 1110

Query: 836  CKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHH 895
                           LI  SGK  +L  +L +LK++G RV++FSQ T MLD+LE  L + 
Sbjct: 1111 ------------GGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYE 1158

Query: 896  QHRYLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCN 954
             ++Y R+DG    + R   ID FN      F FLLST+AGGLGINL +A+ VI+ D D N
Sbjct: 1159 GYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWN 1218

Query: 955  PYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKL 999
            P+ND QA  R HR+GQ  +V++ + +++ ++EE + ++ ++K+ L
Sbjct: 1219 PHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1263


>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
            sapiens]
          Length = 2881

 Score =  268 bits (686), Expect = 1e-71
 Identities = 184/544 (33%), Positives = 277/544 (50%), Gaps = 64/544 (11%)

Query: 485  IEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN 544
            I+Q         L+ YQ  GLNWL     +  N ILADEMGLGKTIQ+I FL  +   G 
Sbjct: 848  IDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEILLTGI 907

Query: 545  NGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQI-RFNIHSRYED------- 596
             GP LI+ P STI NW RE   W   + V+ Y+GS   R+ I ++ ++ R          
Sbjct: 908  RGPFLIIAPLSTIANWEREFRTW-TDINVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGA 966

Query: 597  --YNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLL 654
              +  I+TT+   +    +      ++    I DE H LKN      + L  +N  +++L
Sbjct: 967  YRFQAIITTFEMILGGCGE---LNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVL 1023

Query: 655  LTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQI 714
            LTGTP+QN + EL SLL+F+ P  F S ++ ++     KT          +E++   + I
Sbjct: 1024 LTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLKT----------EEQVQKLQAI 1073

Query: 715  IKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNT-EM 773
            +KP +LRR+KE+V K+L PK++ I    ++  Q++ Y  +  +    ++    + N   +
Sbjct: 1074 LKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNVPNL 1133

Query: 774  CNVMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDM--EVMTDFE 831
             N MM+LRK  NHP L         +K   + +L E           F D      +DF 
Sbjct: 1134 VNTMMELRKCCNHPYL---------IKGAEEKILGE-----------FRDTYNPAASDFH 1173

Query: 832  LHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVL 891
            L                  +I  +GK  ++  +L ++K  G +V++FSQ    LDILE  
Sbjct: 1174 LQA----------------MIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDY 1217

Query: 892  LKHHQHRYLRLDGKTQISERIHLIDEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHD 950
            L H ++ Y R+DG+ + + R   ID F+  D D FVFLL T+AGGLGINLT+A+  I+ D
Sbjct: 1218 LIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFD 1277

Query: 951  IDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGD 1010
             D NP ND QA+ RCHR+GQ K V V +L+++ + E  M      KL L++ +     G 
Sbjct: 1278 SDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGR 1337

Query: 1011 EGSM 1014
            E ++
Sbjct: 1338 ESNV 1341


>gi|148612870 chromodomain helicase DNA binding protein 1-like [Homo
           sapiens]
          Length = 897

 Score =  262 bits (670), Expect = 1e-69
 Identities = 182/507 (35%), Positives = 262/507 (51%), Gaps = 63/507 (12%)

Query: 495 LSLKPYQKVGLNWLALVHKHGLNG-ILADEMGLGKTIQAIAFLAYLYQEGNN-GPHLIVV 552
           + L+ YQ  G+NWLA    H  NG IL DEMGLGKT Q IA   YL    N+ GP LI+ 
Sbjct: 44  IHLRSYQLEGVNWLAQ-RFHCQNGCILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILC 102

Query: 553 PASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSD 612
           P S + NW  E+  + P L  + Y G +EER  ++ ++      ++V++TTY   +    
Sbjct: 103 PLSVLSNWKEEMQRFAPGLSCVTYAGDKEERACLQQDLKQESR-FHVLLTTYEICLK--- 158

Query: 613 DRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLN 672
           D S  +    +  + DE H LKN  S+ ++ L   +    LLLTGTP+QN+L EL SLL+
Sbjct: 159 DASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQELYSLLS 218

Query: 673 FVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKEEVLKQLP 732
           FV P +FS    E    F  + +  +++S    E  +   ++++PF+LRRVK EV  +LP
Sbjct: 219 FVEPDLFS---KEEVGDFIQRYQDIEKES----ESASELHKLLQPFLLRRVKAEVATELP 271

Query: 733 PKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQLRKMANHPLLHRQ 792
            K + +    MS  Q++ Y  +  +   +  N  T K  ++ N++ QLRK  +HP L   
Sbjct: 272 KKTEVVIYHGMSALQKKYYKAILMKDLDAFEN-ETAKKVKLQNILSQLRKCVDHPYL--- 327

Query: 793 YYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLI 852
                                       F+ +E                   F++   L 
Sbjct: 328 ----------------------------FDGVEP----------------EPFEVGDHLT 343

Query: 853 LDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERI 912
             SGK  +L  +L+ L   G RV+LFSQ T MLDIL+  + +  + Y R+DG  +  ER 
Sbjct: 344 EASGKLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERH 403

Query: 913 HLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTK 972
             I  F     IFVFLLST+AGG+G+NLT+A+ VI  D D NP ND QA  R HR+GQ K
Sbjct: 404 LAIKNFG-QQPIFVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNK 462

Query: 973 EVLVIKLISQGTIEESMLKINQQKLKL 999
            V VI+LI + T+EE + +    KL+L
Sbjct: 463 SVKVIRLIGRDTVEEIVYRKAASKLQL 489


>gi|24308089 chromodomain helicase DNA binding protein 5 [Homo
            sapiens]
          Length = 1954

 Score =  249 bits (636), Expect = 9e-66
 Identities = 172/525 (32%), Positives = 265/525 (50%), Gaps = 76/525 (14%)

Query: 496  SLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNN-GPHLIVVPA 554
            +L PYQ  GLNWL      G + ILADEMGLGKT+Q I FL  LY+EG++ GP+L+  P 
Sbjct: 699  TLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPL 758

Query: 555  STIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYED------------------ 596
            STI NW RE  +W P   V+ Y G +E R  IR N  S +ED                  
Sbjct: 759  STIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFS-FEDNAIRSGKKVFRMKKEVQI 817

Query: 597  -YNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLL 655
             ++V++T+Y      + D+++   ++    + DE H LKN  S  ++ L +   + +LLL
Sbjct: 818  KFHVLLTSYELI---TIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLL 874

Query: 656  TGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQII 715
            TGTP+QNNL EL  LLNF+ P  F++    +               I ++++I     ++
Sbjct: 875  TGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQIKKLHDLL 924

Query: 716  KPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCN 775
             P +LRR+K +V K +P K + I    +S+ Q++ Y  +  R  +++N+        + N
Sbjct: 925  GPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQVSLLN 984

Query: 776  VMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVL 835
            +MM L+K  NHP L                    P      P L          ++   L
Sbjct: 985  IMMDLKKCCNHPYLF-------------------PVAAVEAPVL------PNGSYDGSSL 1019

Query: 836  CKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHH 895
             K    +   Q  +  + D G  RVL  I S++ +  D             +LE  L++ 
Sbjct: 1020 VKSSGKLMLLQKMLKKLRDEG-HRVL--IFSQMTKMLD-------------LLEDFLEYE 1063

Query: 896  QHRYLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCN 954
             ++Y R+DG      R   ID FN      F FLLST+AGGLGINL +A+ VI++D D N
Sbjct: 1064 GYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWN 1123

Query: 955  PYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKL 999
            P+ND QA  R HR+GQ K+V++ + +++ ++EE + ++ ++K+ L
Sbjct: 1124 PHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMML 1168


>gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription
            factor-associated, 170kDa [Homo sapiens]
          Length = 1849

 Score =  248 bits (633), Expect = 2e-65
 Identities = 185/564 (32%), Positives = 282/564 (50%), Gaps = 80/564 (14%)

Query: 497  LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLA----YLYQEGNNG------ 546
            L+ YQ+ G+NWLA ++K+ L+GIL D+MGLGKT+Q+I  LA    +  QE          
Sbjct: 1266 LRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRAQEYARSKLAECM 1325

Query: 547  --PHLIVVPASTIDNWLREVNLWCPT--LKVLCYYGSQEERKQIRFNIHSRYEDYNVIVT 602
              P L+V P +   +W+ EV  +C    L  L Y G   ER +++  +    + +N+IV 
Sbjct: 1326 PLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQV----KRHNLIVA 1381

Query: 603  TYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQN 662
            +Y+      +D   FR +K NY I DEGH++KN  +   + +  + AN R++L+GTP+QN
Sbjct: 1382 SYDVV---RNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQN 1438

Query: 663  NLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERI------AHAKQIIK 716
            N+LEL SL +F+MP    +      R       S D +S   ++        A  +Q++ 
Sbjct: 1439 NVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVL- 1497

Query: 717  PFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKK-----SINNLVTEKNT 771
            PF+LRR+KE+VL+ LPPK  +   C +S  Q QLY        K     ++++    + T
Sbjct: 1498 PFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEET 1557

Query: 772  E---------MCNVMMQLRKMANHPLL-----HRQYYT-AEKLKEMSQLMLKEPTHCEAN 816
            E         +   +  LRK+ NHP L     H ++ T AEKL                 
Sbjct: 1558 EKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEFKTTAEKL----------------- 1600

Query: 817  PDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVV 876
                      + +  LH +    +     QL +D  L +G     G   +E      R++
Sbjct: 1601 ---------AVQNSSLHDIQHAPKLSALKQLLLDCGLGNGSTSESG---TESVVAQHRIL 1648

Query: 877  LFSQFTMMLDILEV-LLKHH--QHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKA 933
            +F Q   MLDI+E  LLK H     YLRLDG     +R  ++  FN D  I V LL+T  
Sbjct: 1649 IFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHV 1708

Query: 934  GGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKIN 993
            GGLG+NLT A+ V+  + D NP  D QA DR HR+GQ + V V +LI++GT+EE ++ + 
Sbjct: 1709 GGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQ 1768

Query: 994  QQKLKLEQDMTTVDEGDEGSMPAD 1017
            + K+ +   + + +     SM  D
Sbjct: 1769 KFKMNIANTVISQENSSLQSMGTD 1792


>gi|4557565 excision repair cross-complementing rodent repair
           deficiency, complementation group 6 [Homo sapiens]
          Length = 1493

 Score =  241 bits (616), Expect = 2e-63
 Identities = 165/512 (32%), Positives = 259/512 (50%), Gaps = 71/512 (13%)

Query: 500 YQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYL-----------YQEGNNGPH 548
           YQ+ G+ WL  +H     GIL DEMGLGKTIQ IAFLA L           Y+    GP 
Sbjct: 510 YQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPT 569

Query: 549 LIVVPASTIDNWLREVNLWCPTLKVLCYY--GSQEERKQ--IRFNIHSRYEDYNVIVTTY 604
           +IV P + +  W++E + W P  +V   +  GS   +K+  IR   H     + +++T+Y
Sbjct: 570 VIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYTHKKEKLIRDVAHC----HGILITSY 625

Query: 605 NCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNL 664
           +      DD S   R   +Y I DEGH ++N  +            +R++L+G+P+QNNL
Sbjct: 626 SYIRLMQDDIS---RYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNL 682

Query: 665 LELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHA-----KQIIKPFI 719
            EL SL +F+ P    +    + +     T      +   + + A+      +  I P++
Sbjct: 683 RELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYL 742

Query: 720 LRRVKEEVLKQL--PPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVM 777
           LRR+K +V   L  P K +++  C ++++Q ++Y    +   K +  ++  +  ++ + +
Sbjct: 743 LRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFVD--SKEVYRILNGE-MQIFSGL 799

Query: 778 MQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCK 837
           + LRK+ NHP                 L    P + +  PD   E+              
Sbjct: 800 IALRKICNHP----------------DLFSGGPKNLKGLPDDELEE-------------D 830

Query: 838 QYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQH 897
           Q+ +             SGK  V+  +L    ++G RV+LFSQ   MLDILEV L+  ++
Sbjct: 831 QFGYWKR----------SGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKY 880

Query: 898 RYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYN 957
            YL++DG T I+ R  LI  +N D  IFVFLL+T+ GGLG+NLT AN V+++D D NP  
Sbjct: 881 TYLKMDGTTTIASRQPLITRYNEDTSIFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPST 940

Query: 958 DKQAEDRCHRVGQTKEVLVIKLISQGTIEESM 989
           D QA +R  R+GQ K+V V +L++ GTIEE +
Sbjct: 941 DTQARERAWRIGQKKQVTVYRLLTAGTIEEKI 972


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.131    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,292,376
Number of Sequences: 37866
Number of extensions: 1684510
Number of successful extensions: 7741
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 202
Number of HSP's that attempted gapping in prelim test: 6936
Number of HSP's gapped (non-prelim): 778
length of query: 1028
length of database: 18,247,518
effective HSP length: 112
effective length of query: 916
effective length of database: 14,006,526
effective search space: 12829977816
effective search space used: 12829977816
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 67 (30.4 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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