Guide to the Human Genome
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Name: CTNNA3 Sequence: fasta or formatted (895aa) NCBI GI: 188497716
Description:

catenin, alpha 3

Referenced in:

Cadherins and Related Proteins
Gene Structure

Other entries for this name:
alt mRNA [895aa] catenin, alpha 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         90           2
 C cysteine            2.0         18           1
 D aspartate           5.9         53           2
 E glutamate           8.4         75           3
 F phenylalanine       1.8         16           1
 G glycine             2.7         24           2
 H histidine           2.1         19           1
 I isoleucine          7.4         66           2
 K lysine              7.3         65           3
 L leucine            10.2         91           2
 M methionine          3.0         27           2
 N asparagine          4.6         41           2
 P proline             3.5         31           2
 Q glutamine           4.6         41           2
 R arginine            5.4         48           2
 S serine              7.2         64           2
 T threonine           5.7         51           2
 V valine              6.5         58           2
 W tryptophan          0.4          4           1
 Y tyrosine            1.5         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   catenin, alpha 3 
CTNNA3                1.000   catenin, alpha 3 
CTNNA2                0.617   catenin, alpha 2 
CTNNA1                0.598   catenin, alpha 1 
VCL                   0.087   vinculin isoform VCL 
CTNNAL1               0.070   catenin, alpha-like 1 
VCL                   0.048   vinculin isoform meta-VCL 
MYH11                 0.013   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.013   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.013   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.013   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
CEP110                0.011   centrosomal protein 110kDa 
MYH10                 0.010   myosin, heavy polypeptide 10, non-muscle 
TPR                   0.009   nuclear pore complex-associated protein TPR 
GOLGA5                0.008   Golgi autoantigen, golgin subfamily a, 5 
MYH8                  0.007   myosin, heavy chain 8, skeletal muscle, perinatal [...
GOLGB1                0.007   golgi autoantigen, golgin subfamily b, macrogolgin ...
AKAP9                 0.006   A-kinase anchor protein 9 isoform 2 
CENPF                 0.006   centromere protein F 
AKAP9                 0.006   A-kinase anchor protein 9 isoform 3 
MYH3                  0.006   myosin, heavy chain 3, skeletal muscle, embryonic [H...
MYH7                  0.006   myosin, heavy chain 7, cardiac muscle, beta 
ST8SIA4               0.005   ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransf...
RRBP1                 0.005   ribosome binding protein 1 
RRBP1                 0.005   ribosome binding protein 1 
AGGF1                 0.005   angiogenic factor VG5Q 
NIN                   0.005   ninein isoform 4 
NIN                   0.005   ninein isoform 5 
NIN                   0.005   ninein isoform 1 
NIN                   0.005   ninein isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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