Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TP53 Sequence: fasta or formatted (341aa) NCBI GI: 187830855
Description:

tumor protein p53 isoform b

Referenced in:

BCL2 Pathways, Caspases, and Programmed Cell Death
MAP Kinase Pathways
p53 Pathway
Ubiquitin and Related Protein Modifications

Other entries for this name:
alt prot [393aa] tumor protein p53 isoform a
alt prot [393aa] tumor protein p53 isoform a
alt prot [346aa] tumor protein p53 isoform c
alt prot [261aa] tumor protein p53 isoform d
alt prot [209aa] tumor protein p53 isoform e
alt prot [214aa] tumor protein p53 isoform f
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         20           2
 C cysteine            3.2         11           1
 D aspartate           5.3         18           2
 E glutamate           7.0         24           3
 F phenylalanine       2.6          9           1
 G glycine             5.0         17           2
 H histidine           2.6          9           2
 I isoleucine          2.1          7           2
 K lysine              3.8         13           3
 L leucine             7.9         27           2
 M methionine          2.9         10           1
 N asparagine          4.1         14           2
 P proline            12.6         43           3
 Q glutamine           4.4         15           1
 R arginine            5.9         20           2
 S serine              9.4         32           3
 T threonine           6.2         21           2
 V valine              5.3         18           3
 W tryptophan          1.2          4           1
 Y tyrosine            2.6          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tumor protein p53 isoform b 
TP53                  0.968   tumor protein p53 isoform c 
TP53                  0.968   tumor protein p53 isoform a 
TP53                  0.968   tumor protein p53 isoform a 
TP53                  0.606   tumor protein p53 isoform e 
TP53                  0.574   tumor protein p53 isoform f 
TP53                  0.574   tumor protein p53 isoform d 
TP73                  0.329   tumor protein p73 isoform d 
TP73                  0.329   tumor protein p73 isoform c 
TP73                  0.329   tumor protein p73 isoform b 
TP73                  0.329   tumor protein p73 isoform a 
TP63                  0.328   tumor protein p63 isoform 6 
TP63                  0.328   tumor protein p63 isoform 5 
TP63                  0.328   tumor protein p63 isoform 4 
TP63                  0.328   tumor protein p63 isoform 3 
TP63                  0.328   tumor protein p63 isoform 2 
TP63                  0.328   tumor protein p63 isoform 1 
CRTC1                 0.024   mucoepidermoid carcinoma translocated 1 isoform 3 [...
CRTC1                 0.024   mucoepidermoid carcinoma translocated 1 isoform 1 [...
KAT2A                 0.023   general control of amino acid synthesis 5-like 2 [H...
ACR                   0.022   acrosin precursor 
VASP                  0.020   vasodilator-stimulated phosphoprotein 
BAT2                  0.020   HLA-B associated transcript-2 
SMARCA2               0.020   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.020   SWI/SNF-related matrix-associated actin-dependent re...
CASZ1                 0.020   castor homolog 1, zinc finger isoform a 
CASZ1                 0.020   castor homolog 1, zinc finger isoform b 
C22orf29              0.020   hypothetical protein LOC79680 
ZNF628                0.019   zinc finger protein 628 
FMNL1                 0.019   formin-like 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press